View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18200_low_12 (Length: 494)

Name: NF18200_low_12
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18200_low_12
NF18200_low_12
[»] chr3 (2 HSPs)
chr3 (1-478)||(28707528-28708009)
chr3 (410-469)||(9668685-9668744)
[»] chr1 (5 HSPs)
chr1 (136-336)||(24704642-24704840)
chr1 (273-474)||(20780327-20780527)
chr1 (422-475)||(48815355-48815408)
chr1 (383-471)||(729620-729707)
chr1 (7-67)||(24704558-24704619)
[»] chr2 (2 HSPs)
chr2 (365-456)||(26888439-26888529)
chr2 (130-171)||(26888220-26888261)
[»] chr4 (2 HSPs)
chr4 (372-474)||(11804386-11804487)
chr4 (273-317)||(9801276-9801320)
[»] chr6 (1 HSPs)
chr6 (289-420)||(3674001-3674131)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 28707528 - 28708009
Alignment:
Q  1 ttttctttgctaacatagctaagttaaactccttcatggttctaaatcccattccgccttcatttttatcactacatatatagggaattccatgaaaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28707528 ttttctttgctaacatagctaagttaaactccttcatggttctaaatcccattccgccttcatttttatcactacatatatagggaattccatgaaaccc 28707627  T
Q  101 aatgaattttctgatcaccttgttcactcccccaccaaaatctactgatcatagtttcaatgtgttcacacaggctattcgggatcttgaaacaactcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28707628 aatgaattttctgatcaccttgttcactcccccaccaaaatctacggatcatagtttcaatgtgttcacacaggctattcgggatcttgaaacaactcgt 28707727  T
Q  201 gacatat----gtcagcatcgcttgggctactgctttactgaggacctctctagttgaaaaggacatatgattccttttccaacctttcattttcttcca 296  Q
    |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28707728 gacatatatatgtcagcatcgcttgggctactgctttactgaggacctctctagttgaaaaggacatatgattccttttccaacctttcattttcttcca 28707827  T
Q  297 aactctatcttggacgaaattaaatacatgttgtttagatctccatacaaaggccggtagacccagaaattttgagtgacattccacaaccttaatttgc 396  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28707828 aactctatcttggacgaaattaagtacatgttgtttagatctccatacaaaggccggtagacccagaaattttgagtgacattccacaaccttaatttgc 28707927  T
Q  397 atccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28707928 atccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagt 28708009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 469
Target Start/End: Original strand, 9668685 - 9668744
Alignment:
Q  410 aacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaa 469  Q
    |||| ||||||||||||||||   ||||||| ||||||||||||||| || |||||||||    
T  9668685 aacaaaattttcttctcttcaaaaacatttcggctaaaggaaatttccgacttgtccaaa 9668744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 136 - 336
Target Start/End: Original strand, 24704642 - 24704840
Alignment:
Q  136 caaaatctactgatcatagtttcaatgtgttcacacaggctattcgggatcttgaaacaactcgtgacatatgtcagcatcgcttgggctactgctttac 235  Q
    ||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| | | ||| ||||| |||||||||||     
T  24704642 caaaatctactaatcatattttcaatgtattcacacaggctatccgggatcttgaaacaactcatgacatatgccggaatcacttggactactgctttaa 24704741  T
Q  236 tgaggacctctctagttgaaaaggacatatgattccttttccaacctttcattttcttccaaactctatcttggacgaaattaaatacatgttgtttaga 335  Q
    |||| ||  |||||| || ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| || || |||| ||||||||||||    
T  24704742 tgagaac--ctctagctgcaaaggacatatgatttcttttccaacctttcaacttcttccaaactctatcttggacaaagttgaatatatgttgtttaga 24704839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 474
Target Start/End: Complemental strand, 20780527 - 20780327
Alignment:
Q  273 tttccaacctttcattttcttccaaactctatcttggacgaaattaaatacatgttgtttagatctccatacaaaggccggtagacccagaaattttgag 372  Q
    |||||| ||||| | ||||||||| ||||| ||||||||||||| |||||| ||||| || || |  |  ||| | ||||| || ||||   |||| | |    
T  20780527 tttccatccttttagtttcttccagactctttcttggacgaaatcaaatacttgttgcttggagcggccaacataagccgggaggcccaagtatttcgtg 20780428  T
Q  373 tgacattccacaaccttaatttgcatccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaatta 472  Q
    |||||||||||  ||||||||||||||||||  || |||||| |||||  ||||||| |  || |||| |||||| |||||||||||||| ||||| |||    
T  20780427 tgacattccaccgccttaatttgcatccaac-cttagaacatgatttttctctcttctgtaacgtttcggctaaatgaaatttctgatttctccaagtta 20780329  T
Q  473 at 474  Q
    ||    
T  20780328 at 20780327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 48815355 - 48815408
Alignment:
Q  422 ttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatc 475  Q
    ||||||||||  ||||||| |||||||||||||||||| ||||||| |||||||    
T  48815355 ttctcttcagtaacatttcggctaaaggaaatttctgaattgtccagattaatc 48815408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 729620 - 729707
Alignment:
Q  383 caaccttaatttgcatccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaatt 471  Q
    ||||||||||||| | |||||||| |||||| |||||| |  || || ||||||||||| || || || ||||||||||||||||||||    
T  729620 caaccttaatttgaaaccaacttt-ggaacacaattttatgatcatcgggtacatttcaacttaaagagatttctgatttgtccaaatt 729707  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 24704558 - 24704619
Alignment:
Q  7 ttgctaacatagctaagttaaa-ctccttcatggttctaaatcccattccgccttcattttt 67  Q
    |||| ||||||||||||||||| ||||||||||||| | |||||| | || |||||||||||    
T  24704558 ttgccaacatagctaagttaaaactccttcatggttttgaatcccgtcccaccttcattttt 24704619  T

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Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 26888439 - 26888529
Alignment:
Q  365 attttgagtgacattccacaaccttaatttgcatccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttc 456  Q
    ||||||| ||||| |||||| ||||||||| |||||||| || ||||||| ||||| ||||||||| | ||||||||||||||||| |||||    
T  26888439 attttgaatgacactccacagccttaatttacatccaacctt-ggaacatgatttttttctcttcaagaacatttcagctaaaggagatttc 26888529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 26888220 - 26888261
Alignment:
Q  130 ccccaccaaaatctactgatcatagtttcaatgtgttcacac 171  Q
    ||||||||||||||||| |||||| |||||||||| ||||||    
T  26888220 ccccaccaaaatctactaatcatactttcaatgtgctcacac 26888261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 474
Target Start/End: Complemental strand, 11804487 - 11804386
Alignment:
Q  372 gtgacattccacaaccttaatttgcatccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaatt 471  Q
    |||||||| ||| ||||||||||||||||||| || ||||||| |||||  ||||||| |  || ||||||||||| |||||||||||||| ||||| ||    
T  11804487 gtgacattacaccaccttaatttgcatccaacctt-ggaacatgatttttctctcttctgaaacgtttcagctaaatgaaatttctgatttctccaagtt 11804389  T
Q  472 aat 474  Q
    |||    
T  11804388 aat 11804386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 9801276 - 9801320
Alignment:
Q  273 tttccaacctttcattttcttccaaactctatcttggacgaaatt 317  Q
    ||||||||||||||  |||||||| |||||||||||||| |||||    
T  9801276 tttccaacctttcagcttcttccacactctatcttggacaaaatt 9801320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 3674001 - 3674131
Alignment:
Q  289 ttcttccaaactctatcttggacgaaattaaatacatgttgtttagatctccatacaaaggccggtagacccagaaattttgagtgacattccacaacct 388  Q
    ||||||||||||| ||||||||| ||||| || || || ||||| |||| ||  |||||  | |||| |||||   |||| || ||||| |||| |||||    
T  3674001 ttcttccaaactcgatcttggacaaaattgaacacttgatgttttgatcgccccacaaaaactggtaaacccaagtatttcgaatgacactccagaacct 3674100  T
Q  389 taatttgcatccaacttttggaacataatttt 420  Q
    ||||||||||||||| |||| |||||||||||    
T  3674101 taatttgcatccaac-tttgcaacataatttt 3674131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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