View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18200_low_15 (Length: 479)

Name: NF18200_low_15
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18200_low_15
NF18200_low_15
[»] chr7 (16 HSPs)
chr7 (11-462)||(21410406-21410862)
chr7 (265-348)||(9183148-9183231)
chr7 (265-354)||(45709665-45709754)
chr7 (270-354)||(41519072-41519156)
chr7 (309-354)||(9871287-9871332)
chr7 (265-356)||(15137581-15137672)
chr7 (265-356)||(43663052-43663143)
chr7 (309-354)||(25242026-25242071)
chr7 (265-354)||(25590641-25590730)
chr7 (265-354)||(48771968-48772057)
chr7 (267-342)||(20335790-20335865)
chr7 (313-356)||(42262100-42262143)
chr7 (307-353)||(20952148-20952194)
chr7 (277-354)||(5934151-5934228)
chr7 (269-354)||(22035428-22035513)
chr7 (317-354)||(27776202-27776239)
[»] chr6 (12 HSPs)
chr6 (265-353)||(28363968-28364056)
chr6 (265-342)||(14199904-14199981)
chr6 (265-354)||(20213071-20213160)
chr6 (265-354)||(22107094-22107183)
chr6 (291-353)||(3925775-3925837)
chr6 (265-354)||(31622948-31623037)
chr6 (265-354)||(30127430-30127519)
chr6 (265-342)||(32050313-32050390)
chr6 (309-354)||(33549134-33549179)
chr6 (309-354)||(34786455-34786500)
chr6 (290-354)||(6776589-6776653)
chr6 (309-349)||(13227159-13227199)
[»] chr2 (15 HSPs)
chr2 (265-356)||(28846719-28846810)
chr2 (265-353)||(33582004-33582092)
chr2 (267-349)||(31573600-31573682)
chr2 (265-354)||(37480105-37480194)
chr2 (265-342)||(1435106-1435182)
chr2 (291-355)||(4438962-4439026)
chr2 (265-353)||(25637182-25637270)
chr2 (291-354)||(14500307-14500370)
chr2 (277-356)||(19244137-19244216)
chr2 (290-353)||(25931037-25931100)
chr2 (309-356)||(39715020-39715067)
chr2 (266-343)||(7599939-7600016)
chr2 (276-349)||(41202285-41202358)
chr2 (265-341)||(11251130-11251206)
chr2 (265-345)||(35203340-35203420)
[»] chr1 (26 HSPs)
chr1 (267-354)||(9879468-9879555)
chr1 (265-345)||(7219875-7219955)
chr1 (265-354)||(52336731-52336820)
chr1 (265-356)||(12587298-12587388)
chr1 (265-354)||(9643766-9643855)
chr1 (266-354)||(10526853-10526941)
chr1 (265-356)||(1094553-1094644)
chr1 (277-356)||(51814522-51814601)
chr1 (292-354)||(51703809-51703871)
chr1 (265-342)||(1600249-1600326)
chr1 (265-342)||(6122836-6122913)
chr1 (265-354)||(6650625-6650714)
chr1 (265-342)||(16893436-16893513)
chr1 (265-354)||(28283561-28283650)
chr1 (273-341)||(12662325-12662393)
chr1 (291-355)||(22049811-22049875)
chr1 (291-354)||(15786303-15786366)
chr1 (267-354)||(17745216-17745302)
chr1 (269-352)||(44126427-44126510)
chr1 (309-355)||(12259289-12259335)
chr1 (265-343)||(44961806-44961884)
chr1 (265-342)||(40257441-40257518)
chr1 (265-322)||(48619166-48619223)
chr1 (320-356)||(25297800-25297836)
chr1 (300-356)||(28411358-28411414)
chr1 (265-341)||(34460866-34460942)
[»] chr8 (24 HSPs)
chr8 (266-354)||(7140739-7140826)
chr8 (265-354)||(12281524-12281613)
chr8 (264-356)||(20994413-20994506)
chr8 (270-351)||(24675474-24675555)
chr8 (265-342)||(43968955-43969032)
chr8 (265-353)||(3305145-3305233)
chr8 (265-356)||(31088701-31088792)
chr8 (265-342)||(11819818-11819895)
chr8 (265-354)||(31087215-31087304)
chr8 (265-353)||(4830518-4830606)
chr8 (277-356)||(23361618-23361697)
chr8 (309-354)||(968392-968437)
chr8 (309-354)||(16852370-16852415)
chr8 (309-354)||(19703488-19703533)
chr8 (265-342)||(27750772-27750849)
chr8 (265-334)||(27979207-27979276)
chr8 (265-334)||(28036476-28036545)
chr8 (265-354)||(28898447-28898535)
chr8 (265-346)||(35672482-35672563)
chr8 (265-342)||(35826353-35826430)
chr8 (265-342)||(44780071-44780148)
chr8 (265-341)||(16585445-16585521)
chr8 (309-353)||(30774737-30774781)
chr8 (265-305)||(34797916-34797956)
[»] chr4 (22 HSPs)
chr4 (265-356)||(21660101-21660192)
chr4 (265-356)||(21668865-21668956)
chr4 (265-356)||(28635724-28635815)
chr4 (265-353)||(53496908-53496996)
chr4 (265-356)||(51954142-51954233)
chr4 (265-342)||(7949411-7949488)
chr4 (270-354)||(11592115-11592199)
chr4 (309-356)||(47044745-47044792)
chr4 (309-354)||(39509100-39509145)
chr4 (307-356)||(42644909-42644958)
chr4 (265-342)||(49576851-49576928)
chr4 (291-393)||(31759641-31759735)
chr4 (300-354)||(1730481-1730535)
chr4 (265-342)||(8030161-8030238)
chr4 (309-354)||(38869798-38869843)
chr4 (277-346)||(46545749-46545818)
chr4 (265-342)||(47230558-47230634)
chr4 (309-353)||(306311-306355)
chr4 (265-337)||(9693455-9693527)
chr4 (320-356)||(25869589-25869625)
chr4 (309-353)||(30938220-30938264)
chr4 (309-349)||(41346964-41347004)
[»] scaffold1367 (1 HSPs)
scaffold1367 (265-354)||(797-886)
[»] chr3 (26 HSPs)
chr3 (265-354)||(2667892-2667981)
chr3 (265-354)||(51903835-51903924)
chr3 (268-354)||(44743815-44743901)
chr3 (265-354)||(10445096-10445185)
chr3 (309-354)||(21960581-21960626)
chr3 (265-356)||(17035016-17035105)
chr3 (269-356)||(4844472-4844559)
chr3 (269-356)||(4870168-4870255)
chr3 (292-354)||(4222171-4222233)
chr3 (265-351)||(52769940-52770026)
chr3 (265-342)||(8170714-8170791)
chr3 (265-354)||(10499066-10499155)
chr3 (265-354)||(28531015-28531104)
chr3 (310-354)||(9557350-9557394)
chr3 (265-356)||(13808842-13808933)
chr3 (291-354)||(15048044-15048107)
chr3 (307-346)||(48583449-48583488)
chr3 (264-354)||(31520561-31520651)
chr3 (272-354)||(31788935-31789016)
chr3 (265-342)||(8075084-8075161)
chr3 (309-354)||(30311336-30311381)
chr3 (309-354)||(31608525-31608570)
chr3 (265-342)||(49397498-49397575)
chr3 (307-355)||(11642208-11642256)
chr3 (318-354)||(28928889-28928925)
chr3 (292-340)||(42465514-42465562)
[»] chr5 (15 HSPs)
chr5 (265-356)||(1410618-1410707)
chr5 (265-356)||(16773835-16773926)
chr5 (265-356)||(19949573-19949663)
chr5 (309-354)||(22020863-22020908)
chr5 (265-342)||(29173532-29173609)
chr5 (309-356)||(14495806-14495853)
chr5 (309-354)||(27596357-27596402)
chr5 (265-354)||(29075811-29075900)
chr5 (265-342)||(29210400-29210477)
chr5 (309-354)||(41165630-41165675)
chr5 (270-350)||(21086748-21086828)
chr5 (265-353)||(29692343-29692431)
chr5 (265-349)||(43442231-43442315)
chr5 (271-341)||(1279034-1279104)
chr5 (265-353)||(12877724-12877812)
[»] scaffold0118 (1 HSPs)
scaffold0118 (265-354)||(41590-41679)
[»] scaffold0299 (1 HSPs)
scaffold0299 (290-354)||(11558-11622)
[»] scaffold0211 (1 HSPs)
scaffold0211 (269-342)||(24095-24168)
[»] scaffold0258 (1 HSPs)
scaffold0258 (266-354)||(15281-15369)
[»] scaffold0122 (1 HSPs)
scaffold0122 (265-342)||(6879-6953)
[»] scaffold0008 (1 HSPs)
scaffold0008 (265-354)||(49336-49425)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 462
Target Start/End: Original strand, 21410406 - 21410862
Alignment:
Q  11 gaacctgtgtcttatttccatattgtcatccttaattcgattataataacattttaaatgaatttaaatctcactctcaaaaaccatctcaaaggatgat 110  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  21410406 gaacctgtgtcttatttccatattgtcatccttaattcgactataataacattttaaatgaatttgaatctcactctcaaaagccatctcaaaggatgat 21410505  T
Q  111 ggtacctaaaagtcatatgtacattcaaccatttgaaaattttaacaaagtgagacttcaatacaaattcaatattcaacctcctcatgcctagtgtaaa 210  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  21410506 ggtacctaaaagtcatatgtacattcaaccacttgaaaattttaacaaagtgagacttcaatacaaattcaatattcaa---cctcatgcctagtgtaaa 21410602  T
Q  211 ttttggactcaattccacatatactgtacatccaacaaccggaga----------nnnnnnnngttttgaagaagttaaattagtctacccaaattgata 300  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||                  ||||||| |||| |||||||||||| ||||||||| |    
T  21410603 ttttggactcaattccacatatattgtacatccaacaaccagagatttttgttttgtttttttgttttgacgaagctaaattagtctatccaaattgaca 21410702  T
Q  301 ccagacataatcgaatctgagacttcgaggaggagcacactctcagat-cccaagtcctaagtctaataccaccagattaacccaagtgggttacaaaca 399  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||| ||||||||| ||| || |||||||| ||||||||     
T  21410703 tcagacataatcgaatttgagacttcgaggaggagcacactctcagatccccaaatcttaagtc-aataccacctgatcaaaccaagtggattacaaacg 21410801  T
Q  400 aagaatgttgacgatgttgtactttaatatacacaacttaaatagtggcaagacagccggttt 462  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  21410802 aagaatgttgacgatgtggtactttaatat--acaacttaaatagtggcaagacagccggttt 21410862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 9183148 - 9183231
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagat 348  Q
    ||||||||||  |||||||| | ||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||| |||||    
T  9183148 ttttgaagaaactaaattagcccacccaaattgacaccagagataatcgaacctgagactttgaggaggagcacactcccagat 9183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 45709665 - 45709754
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||| |||||| ||| |||| | ||| |||||| || | || ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  45709665 ttttaaagaagctaagttagcccacctaaattggtatcggagataatcgaacctgagacctcgaggaggagcacactctcagatcccaag 45709754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 41519072 - 41519156
Alignment:
Q  270 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||| |||||||| | ||||||||||| ||| || ||||||||||||||||| | ||| ||||||||||||| | ||||||||    
T  41519072 aagaagctaaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagcacactcttaaatcccaag 41519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 9871287 - 9871332
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||||||||||||||||||||||||||| || ||||||||    
T  9871287 aatcgaatctgagacttcgaggaggagcacactcccaaatcccaag 9871332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 15137672 - 15137581
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||  |||||||| | ||||||||||| |||||| | |||| || ||||||| | ||||||||||||||||  | ||||||||||    
T  15137672 ttttgaagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtc 15137581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 43663052 - 43663143
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| |||||||||| ||||||||||||||| || | | ||||| ||||||  |||||||||| ||| |||  || |||||||||    
T  43663052 ttttgaagaagctaaattagtccacccaaattgataccggagagattcgaacctgagatctcgaggaggaccacgctcctaggtcccaagtc 43663143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 25242071 - 25242026
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  25242071 aatcgaatctgagacctcgaggaggagcatactctcagatctcaag 25242026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 25590730 - 25590641
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | || |||||||| |||  | | ||||||| | ||||| |||||||||||||||||| |||||| ||||    
T  25590730 ttttgaagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactcccagatctcaag 25590641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 48772057 - 48771968
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||| |||||| |||||||| | ||| |||||| |||  |  ||||||||| ||||||| || ||||||||||||||| |||||||||||    
T  48772057 tttttaagaagctaaattagcccacctaaattggtacttgggataatcgaacctgagacctcaaggaggagcacactcccagatcccaag 48771968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 20335790 - 20335865
Alignment:
Q  267 ttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||||||||||||||||| | | ||||||||| | | |  | ||||||| ||||||| ||||||||||||||||||    
T  20335790 ttgaagaagttaaattagcccatccaaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactc 20335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 42262100 - 42262143
Alignment:
Q  313 gaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| |  |||||||||||||||||||||||||||||    
T  42262100 gaatctgagacctttaggaggagcacactctcagatcccaagtc 42262143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 20952148 - 20952194
Alignment:
Q  307 ataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    |||||||||||||||| || |||||||||||||||| ||| ||||||    
T  20952148 ataatcgaatctgagattttgaggaggagcacactcccaggtcccaa 20952194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 5934228 - 5934151
Alignment:
Q  277 taaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||| ||| ||||||| ||||||   |||||||  ||| || || ||||||||||||||| |||||||||||    
T  5934228 taaattagtccacctaaattgacaccagagggaatcgaacatgaaacctcaaggaggagcacactcccagatcccaag 5934151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 22035513 - 22035428
Alignment:
Q  269 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| |||||||||| ||  ||||||| ||  || | ||||||| ||| | | |||||||||||||||||||||| |||||||    
T  22035513 gaagaagctaaattagtccacttaaattgacacaggagagaatcgaacctgggtcctcgaggaggagcacactctcaggtcccaag 22035428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 27776239 - 27776202
Alignment:
Q  317 ctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||||||||||||||||||||||  |||||||    
T  27776239 ctgagacttcgaggaggagcacactctcaagtcccaag 27776202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 28364056 - 28363968
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    |||||||||| ||||||||| | | ||||||||| |||||| ||||||||||||||||| | |||||||||||||||| ||||||||||    
T  28364056 ttttgaagaaattaaattagcccatccaaattgacaccagagataatcgaatctgagaccttgaggaggagcacactcgcagatcccaa 28363968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 14199904 - 14199981
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||| |||||| |||||||||| ||||||||||| || |||   ||||||||||||||| | ||||||||||||||||    
T  14199904 tttttaagaagctaaattagtccacccaaattgacactagaaggaatcgaatctgagaccttgaggaggagcacactc 14199981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 20213160 - 20213071
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | |||||||||||||||| ||| |||||||    
T  20213160 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactcccaggtcccaag 20213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 22107183 - 22107094
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | |||||||||||||||| ||| |||||||    
T  22107183 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactcccaggtcccaag 22107094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 3925837 - 3925775
Alignment:
Q  291 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||||||||||| | ||| ||||||||||||| ||| |||| ||||||||||||| ||||    
T  3925837 caaattgataccagagagaattgaatctgagactttgagaaggaacacactctcagattccaa 3925775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 31622948 - 31623037
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | ||||||||||| ||| ||   | || || ||||||| |||||||||||||||||| ||| |||||||    
T  31622948 ttttgaagaagctaaattagcccacccaaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaag 31623037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 30127519 - 30127430
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||| |||| |||||||  ||||| ||||||  ||| || | ||||||| ||||||| |||| ||||||||||||| |||| ||||||    
T  30127519 ttttgaggaagctaaattaacctacctaaattggcaccggaaagaatcgaacctgagacctcgaagaggagcacactcccagaccccaag 30127430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 32050313 - 32050390
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||| ||||| ||||||||| ||||||||||||| | | || | ||||| ||||||||| | |||||||| |||||||    
T  32050313 tttttaagaaattaaattagcctacccaaattgacatcggaaagaatcggatctgagaccttgaggaggatcacactc 32050390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 33549179 - 33549134
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||||||| |||||||||||||||||| ||| |||||||    
T  33549179 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 33549134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 34786455 - 34786500
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||  |||||||||||| |||||||||||| |||||||||||    
T  34786455 aatcgaacttgagacttcgagaaggagcacactcccagatcccaag 34786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 6776589 - 6776653
Alignment:
Q  290 ccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||| |||||| | |||| ||  |||||| |||||||||||||||| | |||||||||||    
T  6776589 ccaaattgaaaccagagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaag 6776653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 13227159 - 13227199
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatc 349  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  13227159 aatcgaacttgagacttcgaggaggagcacactcccagatc 13227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 28846810 - 28846719
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||| ||||||||||||||||||||||||||||| | | |  ||||||||| ||||||| |||||||||||||||||| ||| |||||||||    
T  28846810 tttttaagaagttaaattagtctacccaaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtc 28846719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 33582092 - 33582004
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||||||| |||||||||| ||| ||||||| |  ||| | ||||||| ||||||| || ||||||||||||||||||| ||||||    
T  33582092 ttttgaagaagctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactctcaggtcccaa 33582004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 31573600 - 31573682
Alignment:
Q  267 ttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 349  Q
    |||||||||||||||||||| ||| ||||||| | |  | | ||||||| ||||||| || ||||||||||||||||||||||    
T  31573600 ttgaagaagttaaattagtccacctaaattgacatcgaagagaatcgaacctgagacatcaaggaggagcacactctcagatc 31573682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 37480194 - 37480105
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | ||||||||||  ||| |  | ||||||| ||||||| | |||||||||||||||||||| |||||||    
T  37480194 ttttgaagaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaag 37480105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 1435182 - 1435106
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||||||||||| |||||| | ||||||| ||||||| | |||||| |||||||||    
T  1435182 ttttgaagaagctaaattagcccacccaaattgacaccagagagaatcgaa-ctgagaccttgaggagaagcacactc 1435106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 4438962 - 4439026
Alignment:
Q  291 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagt 355  Q
    ||||||| ||||||| | |||||||  || ||| | |||||||||||||||||||||||||||||    
T  4438962 caaattggtaccagaaagaatcgaacatgcgaccttgaggaggagcacactctcagatcccaagt 4439026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 25637270 - 25637182
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    |||||||||||||||||||| | ||| ||||||  | | || | || |||| ||||||| ||||| |||||||||||| ||||||||||    
T  25637270 ttttgaagaagttaaattagcccacctaaattggcatcggagagaaccgaacctgagacctcgagaaggagcacactcccagatcccaa 25637182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 14500370 - 14500307
Alignment:
Q  291 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||  |||||| | ||||||||||||||| | |||||||||||||||| |||||| ||||    
T  14500370 caaattggcaccagagagaatcgaatctgagacctagaggaggagcacactcccagatctcaag 14500307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 356
Target Start/End: Complemental strand, 19244216 - 19244137
Alignment:
Q  277 taaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||||| | || |||||||  |||||| | ||||||| ||||||| | | |||||||||||||||||| |||||||||    
T  19244216 taaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtc 19244137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 25931100 - 25931037
Alignment:
Q  290 ccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||||| |||| | | |||||||||||||||||||||||  | ||||||||||| ||||||    
T  25931100 ccaaattgacaccaaagagaatcgaatctgagacttcgaggataaacacactctcaggtcccaa 25931037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 39715067 - 39715020
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||| ||||||| |||||||||||||||||| ||| |||||||||    
T  39715067 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtc 39715020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 7599939 - 7600016
Alignment:
Q  266 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactct 343  Q
    |||||| ||| ||||||||||||| |||||| |||||  | | |||||||  ||| || |||||||||||||||||||    
T  7599939 tttgaataagctaaattagtctacacaaatttataccgaagagaatcgaacatgaaacctcgaggaggagcacactct 7600016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 41202358 - 41202285
Alignment:
Q  276 ttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 349  Q
    ||||||||||| | ||||||||| | |||| | ||| ||| || |||||||||||||||||| |||| ||||||    
T  41202358 ttaaattagtccatccaaattgacatcagagaaaattgaacctaagacttcgaggaggagcatactcccagatc 41202285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 11251206 - 11251130
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 341  Q
    ||||||| ||||||||||||   ||| ||||||| |||||| | |||| || ||||||| | |||||||||||||||    
T  11251206 ttttgaataagttaaattagcacacctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacact 11251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 35203340 - 35203420
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctca 345  Q
    ||||||||||| |||||||  | ||  ||||||| |||| | |||||||||  |||||||| ||||| |||||||||||||    
T  35203340 ttttgaagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagactttgaggatgagcacactctca 35203420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 9879555 - 9879468
Alignment:
Q  267 ttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||||||||||| | ||||||||||| |  ||| ||||||||||||||||| || |||| ||| ||||||||||||||||||    
T  9879555 ttgaagaagttaaattagcccacccaaattgacataagagataatcgaatctgagacctcaaggaagagtacactctcagatcccaag 9879468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 7219875 - 7219955
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctca 345  Q
    ||||||||||| |||||||||| ||| |||||| || || | | ||||||| |||||||||||||||||||||||||||||    
T  7219875 ttttgaagaagctaaattagtccacctaaattggtatcaaagagaatcgaacctgagacttcgaggaggagcacactctca 7219955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 52336731 - 52336820
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||| ||||||||| | | ||||||||| |||||| ||||||||| ||||||  |  ||||||||||||||| |||||||||||    
T  52336731 ttttgaagaaattaaattagcccatccaaattgacaccagagataatcgaacctgagatcttaaggaggagcacactcccagatcccaag 52336820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 12587388 - 12587298
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| |||||||| | ||| ||||||  ||| || | ||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  12587388 ttttgaagaagctaaattagcccacctaaattgc-accggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtc 12587298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 9643766 - 9643855
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||||||||||||  ||||  ||||||| ||| || ||||| ||||||||||| | ||||| || ||||||| |||||||||||    
T  9643766 ttttgaagaagttaaattaacctacaaaaattgacaccggagataattgaatctgagaccttgaggatgaacacactcccagatcccaag 9643855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 10526941 - 10526853
Alignment:
Q  266 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||| |||||||  | |||||||||||  ||||| | ||||||||||||||| | ||||||||||| |||| ||| |||||||    
T  10526941 tttgaagaagctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaag 10526853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 1094644 - 1094553
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||||||||||||||||| | ||| ||||||  ||| || | |||||||| |||||| ||| |||||||||||||| ||| | |||||||    
T  1094644 ttttgaagaagttaaattagcccacctaaattggcaccggagagaatcgaatttgagacctcgtggaggagcacactcacaggttccaagtc 1094553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 356
Target Start/End: Complemental strand, 51814601 - 51814522
Alignment:
Q  277 taaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||||| | ||||||||||  ||| || | ||||||| ||||||| | ||||||||||||||||||||||| ||||||    
T  51814601 taaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtc 51814522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 51703871 - 51703809
Alignment:
Q  292 aaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||||||| | ||||||| |||| |||| |||||||||||||||| ||||| |||||    
T  51703871 aaattgataccagagagaatcgaacctgaaactttgaggaggagcacactcccagattccaag 51703809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 1600249 - 1600326
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| ||| |||||| | ||||||||| |||||| | ||||||| |||| ||||  |||||||||||||||    
T  1600249 ttttgaagaagctaagttagtccatccaaattgacaccagagagaatcgaacctgaaactttaaggaggagcacactc 1600326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 6122913 - 6122836
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  6122913 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactc 6122836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 6650714 - 6650625
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||| || || ||| ||||||| |||||| | ||||||| ||||||| | ||||||||||| |||| | |||||||||    
T  6650714 ttttgaagaagctaaactaatccacctaaattgacaccagagagaatcgaacctgagacattgaggaggagcatactccccgatcccaag 6650625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 16893513 - 16893436
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | || |||||||| ||| || | ||||||| ||||||| ||||||||||| ||||||    
T  16893513 ttttgaagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactc 16893436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 28283650 - 28283561
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||| ||||||||||||||| ||||  ||||||| |||||| | ||||||| ||||||| || |||| || |||||||||| ||| ||||    
T  28283650 tttttaagaagttaaattagactacataaattgacaccagagagaatcgaacctgagacatcaaggaagaacacactctcaaatctcaag 28283561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 12662393 - 12662325
Alignment:
Q  273 aagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 341  Q
    |||||||||||||| ||| ||||||  |  ||| ||||||||| ||||||| |||||||||||||||||    
T  12662393 aagttaaattagtccacctaaattggcattagagataatcgaacctgagacatcgaggaggagcacact 12662325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 22049811 - 22049875
Alignment:
Q  291 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagt 355  Q
    |||||||| |||||| | |||||||||| | || | |||||| ||||||||||||||||||||||    
T  22049811 caaattgacaccagagagaatcgaatctcaaaccttgaggagaagcacactctcagatcccaagt 22049875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 15786303 - 15786366
Alignment:
Q  291 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||| |||| | | ||||||| ||||||| | |||||||||||||||| |||||||||||    
T  15786303 caaattgacaccaaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaag 15786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 354
Target Start/End: Original strand, 17745216 - 17745302
Alignment:
Q  267 ttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||| |||||||  | ||| ||||||| |||||| | |||||||  |||||| |||||||||||||||| ||||| |||||||    
T  17745216 ttgaagaagctaaattaacc-acctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaag 17745302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 44126510 - 44126427
Alignment:
Q  269 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatccca 352  Q
    ||||||| |||||||| ||||| ||||||  || ||| | |||| |||||||||| ||| |||||||||||||| ||| |||||    
T  44126510 gaagaagctaaattagcctacctaaattggcactagagagaatcaaatctgagacctcgtggaggagcacactcccaggtccca 44126427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 12259335 - 12259289
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaagt 355  Q
    |||||||  ||||||||||||||||||||||||| || |||||||||    
T  12259335 aatcgaacttgagacttcgaggaggagcacactcccaaatcccaagt 12259289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 44961884 - 44961806
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactct 343  Q
    |||| |||||| |||||||| | ||||||||||| || ||| | ||||||| |||||||   |||||||||||||||||    
T  44961884 tttttaagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactct 44961806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 40257518 - 40257441
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||| ||| | ||||||||||| ||| || | ||| |||  |||||| ||||||||||||||||||    
T  40257518 ttttgaagaagctaaactagcccacccaaattgacaccggatagaattgaacttgagacctcgaggaggagcacactc 40257441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 48619166 - 48619223
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgaga 322  Q
    |||||||||||||||||||||| || |||||||| ||| || ||||| ||| ||||||    
T  48619166 ttttgaagaagttaaattagtccactcaaattgacaccggagataatagaacctgaga 48619223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 25297836 - 25297800
Alignment:
Q  320 agacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||| |||||||||||||||||||||||||| |||||    
T  25297836 agacctcgaggaggagcacactctcagatcctaagtc 25297800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 28411414 - 28411358
Alignment:
Q  300 accagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||| | ||| ||||||||||| || | |||||||||||||||| ||||||||||    
T  28411414 accagagagaattgaatctgagacctcaaagaggagcacactctcatatcccaagtc 28411358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 34460866 - 34460942
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 341  Q
    ||||||||||  |||||||||| ||| ||||||  |||||| ||||| ||||||||||| |  ||||||| ||||||    
T  34460866 ttttgaagaaactaaattagtccacctaaattggaaccagagataattgaatctgagaccttcaggaggaacacact 34460942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 7140826 - 7140739
Alignment:
Q  266 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||| |||||||| | ||||||||||||||| || | ||||||||||||||  |||||||||||||||| | |||||||||||    
T  7140826 tttgaagaaggtaaattagcccacccaaattgatacc-gagagaatcgaatctgagagctcgaggaggagcacacacccagatcccaag 7140739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 12281613 - 12281524
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| ||||||||||  |  ||||||| | | || | ||||||||||||||| ||||||||| |||||||||||| |||||||    
T  12281613 ttttgaagaagctaaattagtcagcttaaattgacatcggagaaaatcgaatctgagacctcgaggaggggcacactctcaggtcccaag 12281524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 20994413 - 20994506
Alignment:
Q  264 gttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgagg-aggagcacactctcagatcccaagtc 356  Q
    ||||| |||||| |||||||| | | |||||||| ||||||| ||||||||  ||||||||| |||| |||||||||||| ||| |||||||||    
T  20994413 gtttttaagaagctaaattagcccatccaaattggtaccagagataatcgatcctgagactttgagggaggagcacactcccaggtcccaagtc 20994506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 24675474 - 24675555
Alignment:
Q  270 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatccc 351  Q
    ||||||||||||||||  | ||||||| | | |||| | ||||||||||||||| | ||| |||||||||||||||||||||    
T  24675474 aagaagttaaattagttcatccaaattaacatcagagaaaatcgaatctgagaccttgagaaggagcacactctcagatccc 24675555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 43968955 - 43969032
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||| |||||| |||||||||| ||| ||||| | |||||| ||||||||||||||||| ||  ||||||||||||||    
T  43968955 tttttaagaagataaattagtccacctaaattaacaccagagataatcgaatctgagacctcagggaggagcacactc 43969032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 3305145 - 3305233
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||| ||||| |||||||| | ||| ||||||  |||||| |||||||||| |||||| | |||||||||||| ||| ||||||||||    
T  3305145 ttttgcagaagataaattagcccacctaaattggcaccagagataatcgaatttgagaccttgaggaggagcacgctcccagatcccaa 3305233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 31088792 - 31088701
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||||||||||||||||| ||||| |||||| || |||| | |||| || ||||||| |||||||  | ||||||| ||| |||||||||    
T  31088792 ttttgaagaagttaaattagcctacctaaattggtatcagagagaatcaaacctgagacctcgaggataatcacactcgcaggtcccaagtc 31088701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 11819895 - 11819818
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  11819895 ttttgaagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactc 11819818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 31087215 - 31087304
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||| ||||||||||||||| |||   ||||||| ||| || ||||||||| ||||||| ||||||||| | | |||| |||||||||||    
T  31087215 tttttaagaagttaaattagcctatttaaattgacaccggagataatcgaacctgagacctcgaggagggggatactcccagatcccaag 31087304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 4830606 - 4830518
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||||||| ||||||| || | ||||||||| |||  | | | | ||| ||||||| |||||||||| ||||||||||||||||||    
T  4830606 ttttgaagaagctaaattaatccatccaaattgacaccgtataaatttgaacctgagacctcgaggaggaacacactctcagatcccaa 4830518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 23361618 - 23361697
Alignment:
Q  277 taaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||||| | ||| ||||||| |||||| | ||| ||| ||||||| | |||||||||||||||| || ||||||||||    
T  23361618 taaattagcccacctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtc 23361697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 968437 - 968392
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||||||| |||||||||||||||||| ||| |||||||    
T  968437 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 968392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 16852415 - 16852370
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||||||| |||||||||||||||||| ||| |||||||    
T  16852415 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 16852370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 19703488 - 19703533
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||||||| | |||||||||||||||||||| |||||||    
T  19703488 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaag 19703533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 27750849 - 27750772
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||| |||||| |||||||||| | ||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  27750849 tttttaagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactc 27750772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 27979276 - 27979207
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggagga 334  Q
    |||||||||||||||||||| | | ||||||||| || ||| |||||||||  | |||||| ||||||||    
T  27979276 ttttgaagaagttaaattagcccatccaaattgacactagagataatcgaacttaagactttgaggagga 27979207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 28036545 - 28036476
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggagga 334  Q
    |||||||||||||||||||| | | ||||||||| || ||| |||||||||  | |||||| ||||||||    
T  28036545 ttttgaagaagttaaattagcccatccaaattgacactagagataatcgaacttaagactttgaggagga 28036476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 28898447 - 28898535
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||| ||||||||||||||||| | ||||||||| | |||| | ||||||| |||| |  | ||||||| |||||||||||||| |||||    
T  28898447 tttttaagaagttaaattagtccatccaaattgaca-cagaaaaaatcgaacctgaaatattgaggaggggcacactctcagattccaag 28898535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 35672482 - 35672563
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 346  Q
    ||||||||||| |||||||||| | ||||||||| ||| || | |||| || |||  ||||| |||||||||| ||||||||    
T  35672482 ttttgaagaagctaaattagtccatccaaattgacaccggagagaatcaaacctgcaacttcaaggaggagcatactctcag 35672563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 35826430 - 35826353
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||| ||||||||||||||||| ||| ||||||| ||| |  | ||||||||| || ||||  |||||||||||||||    
T  35826430 tttttaagaagttaaattagtccacctaaattgacaccggtgagaatcgaatccgaaactttaaggaggagcacactc 35826353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 44780071 - 44780148
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||||||||||| || |||   |||| || ||||||| | ||||||||||||||||    
T  44780071 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactc 44780148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 16585445 - 16585521
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 341  Q
    ||||||||||| |||||||| |||| |||||||  | |||| ||||||||| |||| ||  ||| ||||||||||||    
T  16585445 ttttgaagaagctaaattagcctactcaaattggcatcagagataatcgaagctgaaaccacgaagaggagcacact 16585521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 30774737 - 30774781
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||||||||||| |||||||||| ||||||  ||||||||||    
T  30774737 aatcgaatctgagacctcgaggaggaacacacttccagatcccaa 30774781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 34797956 - 34797916
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccaga 305  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  34797956 ttttgaagaagttaaattagcttatccaaattgataccaga 34797916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 21660101 - 21660192
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||| |||||| |||||||||||||| ||||||| || ||| |||||||||  |||||| ||||||| |||||||||| |||||| ||||||    
T  21660101 tttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtc 21660192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 21668865 - 21668956
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||| |||||| |||||||||||||| ||||||| || ||| |||||||||  |||||| ||||||| |||||||||| |||||| ||||||    
T  21668865 tttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtc 21668956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 28635815 - 28635724
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| |||||||| | ||||||||||  |||||| | ||||||| || |||| || ||||||||||||||| |||||||||||||    
T  28635815 ttttgaagaagctaaattagcccacccaaattggcaccagagagaatcgaacctaagacctccaggaggagcacactcccagatcccaagtc 28635724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 53496996 - 53496908
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    |||| ||||||||||||||||| | ||||||||   ||||| | |||| |||||||||||| |||||||||||||||| ||| ||||||    
T  53496996 tttttaagaagttaaattagtccaaccaaattggctccagagagaatcaaatctgagactttgaggaggagcacactcccaggtcccaa 53496908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 51954233 - 51954142
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| |||||||| | ||||||||||| ||| || |||||| || ||||||| ||||||||||||| |||| ||  |||||||||    
T  51954233 ttttgaagaagctaaattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactcccaagtcccaagtc 51954142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 7949411 - 7949488
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||| ||||||| |||||| | ||||||| ||||||| | ||||||||||||||||    
T  7949411 ttttgaagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactc 7949488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 11592115 - 11592199
Alignment:
Q  270 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||||||  | || ||||||| | ||||| ||||||||| || |||| | |||||||||||||||||||| |||||||    
T  11592115 aagaagttaaattaaccaactcaaattggttccagagataatcgaacctaagacctggaggaggagcacactctcaggtcccaag 11592199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 47044792 - 47044745
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  47044792 aatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtc 47044745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 39509145 - 39509100
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||    
T  39509145 aatcgaacctgagacctcgaggaggagcacactcccagatcccaag 39509100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 42644909 - 42644958
Alignment:
Q  307 ataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||| ||||||||| ||||| || |||||||||||||||||||||    
T  42644909 ataatcgaacctgagactttgaggaagaacacactctcagatcccaagtc 42644958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 49576851 - 49576928
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||||||| |||||| ||||||||||| |   || | ||||||| ||||||| | ||||||||||||||||    
T  49576851 ttttgaagaagttaagttagtccacccaaattgacattggagagaatcgaacctgagaccttgaggaggagcacactc 49576928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 31759641 - 31759735
Alignment:
Q  291 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtcctaagtctaataccaccagattaacccaagtggg 390  Q
    ||||||| ||||||| | ||||||||||||||| | ||||||||||||||       |||||||||| ||| | |||||||| |||| ||||||||||||    
T  31759641 caaattggtaccagaaagaatcgaatctgagaccttgaggaggagcacac-------tcccaagtcccaag-ccaataccactagatcaacccaagtggg 31759732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 1730481 - 1730535
Alignment:
Q  300 accagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||| | ||| ||||||||||||| || ||||||||||||||||| |||||||    
T  1730481 accagagagaatagaatctgagactttgaagaggagcacactctcaggtcccaag 1730535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 8030161 - 8030238
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||||||||||| || |||   |||||||  |||||| | ||||||||||||||||    
T  8030161 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagcacactc 8030238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 38869843 - 38869798
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||||||| | |||||||||||||||| |||||||||||    
T  38869843 aatcgaacctgagaccttgaggaggagcacactcccagatcccaag 38869798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 46545818 - 46545749
Alignment:
Q  277 taaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 346  Q
    |||||||||| | | ||||||| | |||| | ||||||||||||||  | ||||||||||||||||||||    
T  46545818 taaattagtccatctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcag 46545749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 47230634 - 47230558
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||| |||||| ||| ||| | ||| |||| ||||||||||| |||||||||||||    
T  47230634 ttttgaagaagataaattagcccacctaaattggtactaga-agaattgaatttgagacttcgatgaggagcacactc 47230558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 306311 - 306355
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    |||||||||||||||||  | ||||| ||||||||||||||||||    
T  306311 aatcgaatctgagactttaaagaggatcacactctcagatcccaa 306355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 9693455 - 9693527
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagca 337  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | |||||||||||    
T  9693455 ttttgaagaaggtaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagca 9693527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 25869589 - 25869625
Alignment:
Q  320 agacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  25869589 agactttgaggaggagcacactctcagatctcaagtc 25869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 30938220 - 30938264
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||||    
T  30938220 aatcgaacctgagacctcgaggaggagcacactccaagatcccaa 30938264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 41346964 - 41347004
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatc 349  Q
    ||||||| ||||||||||||||||||||| |||| ||||||    
T  41346964 aatcgaacctgagacttcgaggaggagcatactcccagatc 41347004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 797 - 886
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||| ||||||  || ||||||||| |||| ||| | ||||||| ||||||||||||||||||||||| || |||||||||||    
T  797 ttttgaataagctaaatttatccacccaaattaatactagagagaatcgaacctgagacttcgaggaggagcacattcccagatcccaag 886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 2667981 - 2667892
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||| ||| | ||| ||||||| || ||| ||||||||| ||||||| ||||||| |||||||||| |||||||||||    
T  2667981 ttttgaagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaag 2667892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 51903835 - 51903924
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | || |||||||| ||| || | ||||||| |||||||  ||||||||||||||||| |||||||||||    
T  51903835 ttttgaagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaag 51903924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 44743815 - 44743901
Alignment:
Q  268 tgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||| |||||||  | ||||||||||  ||  || ||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  44743815 tgaagaagctaaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagcacactcccagatcccaag 44743901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 10445096 - 10445185
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | || ||||||   |||||| | ||||||| ||||||| |||||||||||||||||| ||| |||||||    
T  10445096 ttttgaagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 10445185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 21960626 - 21960581
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||    
T  21960626 aatcgaatctgagacctcgaggaggagcacactctcaggtcccaag 21960581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 17035105 - 17035016
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||| ||||||||||||||||| |||||||||||||||    | ||||||| ||||||| | ||||| |||  |||||||||||||||||||    
T  17035105 tttttaagaagttaaattagtccacccaaattgataccgaggagaatcgaacctgagaccttgaggatgag--cactctcagatcccaagtc 17035016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 4844472 - 4844559
Alignment:
Q  269 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||| |||||||| | || |||||||  ||| || | ||||||  ||||||| |||||||||||||||||| |||||||||||||    
T  4844472 gaagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtc 4844559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 4870168 - 4870255
Alignment:
Q  269 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||| |||||||| | || |||||||  ||| || | ||||||  ||||||| |||||||||||||||||| |||||||||||||    
T  4870168 gaagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtc 4870255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 4222233 - 4222171
Alignment:
Q  292 aaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| |||||| | ||||||| || |||||| |||||||||||||||| |||||||||||    
T  4222233 aaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaag 4222171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 351
Target Start/End: Original strand, 52769940 - 52770026
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatccc 351  Q
    ||||||||||| |||||||| | ||| ||||||| || | | | ||||||| ||||||| || ||||||||||||||| ||||||||    
T  52769940 ttttgaagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 8170791 - 8170714
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||||||||| ||||||||| | ||||||||||| ||||||   ||||||| ||||||| | ||| ||||||||||||    
T  8170791 ttttgaagaatttaaattagcccacccaaattgacaccagaggaaatcgaacctgagaccttgagtaggagcacactc 8170714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 10499066 - 10499155
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | ||||||||||| | | || | ||||||| ||||||| || |||| ||||| |||| |||||||||||    
T  10499066 ttttgaagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaag 10499155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 28531015 - 28531104
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||| |||||||| | ||||||||||| |||||| | ||| ||  || |||| ||||||||||||| |||| |||||||||||    
T  28531015 ttttgaataagctaaattagcccacccaaattgacaccagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaag 28531104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 9557394 - 9557350
Alignment:
Q  310 atcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||    
T  9557394 atcgaacctgagatctcgaggaggagcacactctcagatcccaag 9557350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 13808842 - 13808933
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| ||||||| || | ||||||||| |  ||| | ||| ||| ||||||| | |||||||||||||||  |||||||||||||    
T  13808842 ttttgaagaagctaaattaatccatccaaattgacattagagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtc 13808933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 15048044 - 15048107
Alignment:
Q  291 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||  |||||| ||||||||| ||||||| | ||||||||||||| || |||||||||||    
T  15048044 caaattggcaccagagataatcgaacctgagaccttgaggaggagcacattcccagatcccaag 15048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 48583449 - 48583488
Alignment:
Q  307 ataatcgaatctgagacttcgaggaggagcacactctcag 346  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  48583449 ataatcgaatctgagactttgaggaggaggacactctcag 48583488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 354
Target Start/End: Original strand, 31520561 - 31520651
Alignment:
Q  264 gttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||| ||| |||||||| | || |||||||| ||  || | |||| || || |||| |||||||||||||||||| |||||||||||    
T  31520561 gttttgaaaaagctaaattagcccactcaaattgacactggagagaatcaaacctaagacctcgaggaggagcacactcccagatcccaag 31520651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 31788935 - 31789016
Alignment:
Q  272 gaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||| ||| | ||||||||||| || ||| |||||| || || | || |||||||||||||||||| |||||||||||    
T  31788935 gaagttaaactagcccacccaaattgacac-agagataatcaaacctaaaacctcgaggaggagcacactcccagatcccaag 31789016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 8075084 - 8075161
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| |||| || | ||||||||||||||||    
T  8075084 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgaaaccttgaggaggagcacactc 8075161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 30311381 - 30311336
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| ||||||| | |||||||||||||||| |||||||||||    
T  30311381 aatcgaacctgagaccttgaggaggagcacactcccagatcccaag 30311336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 31608525 - 31608570
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||| |||||||||| |||||||||||||||||| |||||| ||||    
T  31608525 aatcaaatctgagacctcgaggaggagcacactcccagatctcaag 31608570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 49397498 - 49397575
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||||| ||| ||||||| | |  | |||||||||  |||||| |||||||| |||||||||    
T  49397498 ttttgaagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagacctcgaggagaagcacactc 49397575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 11642208 - 11642256
Alignment:
Q  307 ataatcgaatctgagacttcgaggaggagcacactctcagatcccaagt 355  Q
    ||||||||| ||||||| | |||||||| |||| |||||||||||||||    
T  11642208 ataatcgaacctgagaccttgaggaggatcacaatctcagatcccaagt 11642256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 28928889 - 28928925
Alignment:
Q  318 tgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||| || ||||||||||||||||||||||||||||    
T  28928889 tgagaatttgaggaggagcacactctcagatcccaag 28928925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 42465514 - 42465562
Alignment:
Q  292 aaattgataccagacataatcgaatctgagacttcgaggaggagcacac 340  Q
    |||||||||| | | |||||||||||||||||||  |||||||||||||    
T  42465514 aaattgatactaaagataatcgaatctgagactttaaggaggagcacac 42465562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 1410618 - 1410707
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| |||||||| |||||||| |||| |||| | | ||||||| ||||||| |||||||||||||||||| || ||||||||||    
T  1410618 ttttgaagaagctaaattagcctacccaa-ttgacaccacagagaatcgaa-ctgagacctcgaggaggagcacactcccatatcccaagtc 1410707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 16773926 - 16773835
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    ||||||||||| |||||||| | ||| ||||||  | |||| | ||||||| ||||||| |||||||||||||||||| ||| |||||||||    
T  16773926 ttttgaagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtc 16773835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 19949573 - 19949663
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||||||||||||||||||||||| ||||||||| ||| |  | ||| ||| ||||||  ||||||||||||||||||| ||||| ||||||    
T  19949573 ttttgaagaagttaaattagtctatccaaattgacaccggtgaaaattgaacctgagagctcgaggaggagcacactct-agatctcaagtc 19949663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 22020863 - 22020908
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||    
T  22020863 aatcgaatctgagacttcaaggaggagcacactcccagatcccaag 22020908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 29173609 - 29173532
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||| |||||| |||||||| | ||| ||||||| |||||| ||||||||| |||| || ||||||||||||||||||    
T  29173609 tttttaagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactc 29173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 14495806 - 14495853
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaagtc 356  Q
    |||| |||||||||| |||||||||||||||||| |||||||||||||    
T  14495806 aatcaaatctgagacctcgaggaggagcacactcccagatcccaagtc 14495853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 27596402 - 27596357
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  27596402 aatcgaatctaagacctcgaggaggaggacactctcagatcccaag 27596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 29075900 - 29075811
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||||| |||||||| | | | ||||||  |||||| | |||||||  |||||  |||||||||||||||||| |||||||||||    
T  29075900 ttttgaagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaag 29075811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 29210477 - 29210400
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||| |||||| |||||||||| ||| |||||||||||||| | ||| |||  ||| || ||||||||||||||||||    
T  29210477 tttttaagaagctaaattagtccacctaaattgataccagagagaattgaacttgaaacctcgaggaggagcacactc 29210400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 41165630 - 41165675
Alignment:
Q  309 aatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||| |||||||||| |||||||||||| |||||||||||    
T  41165630 aatcgaatctaagacttcgagaaggagcacactcccagatcccaag 41165675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 21086828 - 21086748
Alignment:
Q  270 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 350  Q
    |||||||||||||||   | | ||||||| |||||| ||||||||||||||||  | |||||||||||||||  |||||||    
T  21086828 aagaagttaaattaggtcatctaaattgacaccagagataatcgaatctgagatcttgaggaggagcacactgccagatcc 21086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 29692343 - 29692431
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||||||  |||||||||| ||||||||||  | | || | |||  || ||||||||| |||||||||||||||| ||||||||||    
T  29692343 ttttgaagaaactaaattagtccacccaaattggcatcggagagaattaaacctgagactttgaggaggagcacactcccagatcccaa 29692431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 43442315 - 43442231
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 349  Q
    ||||||||||  |||||||| | | ||||||||| | |||| | ||||||| ||||||| | |||||||||||||||| ||||||    
T  43442315 ttttgaagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatc 43442231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 1279104 - 1279034
Alignment:
Q  271 agaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 341  Q
    ||||| |||||||||| ||||||||||| |||||| | |||| ||  |||||| |||| ||||||||||||    
T  1279104 agaagctaaattagtccacccaaattgacaccagagagaatctaacttgagacctcgatgaggagcacact 1279034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 12877812 - 12877724
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaa 353  Q
    ||||||||||| |||||||| | ||| |||||  ||||||| | ||||||| ||||||| | |||||| | ||||||| || |||||||    
T  12877812 ttttgaagaagctaaattagcccacctaaattagtaccagagagaatcgaacctgagacattgaggagaaacacactcccaaatcccaa 12877724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 41590 - 41679
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||||| | |||||||| | ||||||||||| | |||| | ||| ||| ||||||| ||||||||||||| ||||||||||| ||||    
T  41590 ttttgaagaggctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaag 41679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 11622 - 11558
Alignment:
Q  290 ccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    ||||||| | |||||| | ||||||| ||||||| |||||||||||||||||| |||||||||||    
T  11622 ccaaattaacaccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaag 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 24168 - 24095
Alignment:
Q  269 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    |||||||||||||||| | || |||||||  | |||| ||||||||| |||| ||||||| |||||||||||||    
T  24168 gaagaagttaaattagcccactcaaattggcatcagagataatcgaacctgacacttcgaagaggagcacactc 24095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 15281 - 15369
Alignment:
Q  266 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||||||||| |||||||| | ||| ||||||  | | || | ||||||| ||||||| |||||||||||||||||| ||| |||||||    
T  15281 tttgaagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 15369  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 6879 - 6953
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 342  Q
    ||||||||||| |||||||| | || |||||||| |||||| ||   |||| ||||||||| ||||||||||||||||    
T  6879 ttttgaagaagctaaattagcccactcaaattgacaccagagat---cgaacctgagactttgaggaggagcacactc 6953  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 49425 - 49336
Alignment:
Q  265 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcccaag 354  Q
    |||| ||||||||||||||  | ||  ||||||| ||| || | ||||||| |||| || |||| |||||||||||||||| ||||||||    
T  49425 tttttaagaagttaaattaacccacttaaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaag 49336  T

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