View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_17 (Length: 379)
Name: NF18200_low_17
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 32139255 - 32138903
Alignment:
| Q |
18 |
actttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccaaagaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32139255 |
actttctctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccagagaa |
32139156 |
T |
|
| Q |
118 |
ccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctgcacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32139155 |
ccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctgcacg |
32139056 |
T |
|
| Q |
218 |
ctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaacaacacctgtggtgtcacc |
317 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32139055 |
ctgccgttcagcccaatgctcccttgcaaattccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaacaacacttgtggtgtcacc |
32138956 |
T |
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| Q |
318 |
ccggacaatagcattacccacaccgccaccagcggtgaacttgctgatgatgt |
370 |
Q |
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| T |
32138955 |
ccggacaatagcattacccacaccgccaccagcggtgaacttgctgaagatgt |
32138903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 32148645 - 32148299
Alignment:
| Q |
18 |
actttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccaaagaa |
117 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
32148645 |
actttctctaaacaatctttcaggccaaaagccctagttctcccagtcacaaaagatgtcgctaccacaaaccaatacaaagctcaaatcaaccaaagaa |
32148546 |
T |
|
| Q |
118 |
ccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctgcacg |
217 |
Q |
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| ||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||| | |||||||| ||||||||||| |||||||| |
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| T |
32148545 |
caccactagtcccactgaacatcatcgtcgatctcggtggcctgtttctctgggttgattgcgaaaaccagtacatttcctccacataccgtcctgcacg |
32148446 |
T |
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| Q |
218 |
ctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaacaacacctgtggtgtcacc |
317 |
Q |
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|| || || |||||||||||||| || |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
32148445 |
gtgtcgctctgcccaatgctcccttgccaaattcgacgactgtggtgtttgtttctcatcaccaaaacctggctgcaacaacaacacctgcagtgttgcc |
32148346 |
T |
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| Q |
318 |
ccggacaatagcattacccacaccgccaccagcggtgaacttgctga |
364 |
Q |
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| T |
32148345 |
ccagggaatagcgttacccagagcgccatgagcggtgaactggctga |
32148299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 32127472 - 32127187
Alignment:
| Q |
16 |
caactttctctcaacaatctttcaggccaaaagcccttgttctccc-agtcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccaaa |
114 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||| | || |||||| |||||||| ||||||||| ||||||| |
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| T |
32127472 |
caactttctctcaacaatcattcagacccaaagcacttgttctccccagtcacaaaagatagcgcaacaacactccaatacatagctcaaattaaccaaa |
32127373 |
T |
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| Q |
115 |
gaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctgc |
214 |
Q |
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|||||||| |||||||||| ||| | |||| ||||| || ||| | ||||| ||||| ||||| |||||| | |||| ||| |||||||||||||||| |
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| T |
32127372 |
gaaccccactagtcccactaaaccttgtcgttgatcttggcggcaaatttctctgggtcgactgtgaaaaccactacacttcctccacataccgccctgt |
32127273 |
T |
|
| Q |
215 |
acgctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaaca |
300 |
Q |
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||| |||| || ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32127272 |
acggtgcccctccgcccaatgctccctcgccaaatctgatagctgtggtgattgtttctcatcaccaaaacccggctgcaacaaca |
32127187 |
T |
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