View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_18 (Length: 369)
Name: NF18200_low_18
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_18 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 32138572 - 32138931
Alignment:
| Q |
10 |
agcagaacctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatctgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccg |
109 |
Q |
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| T |
32138572 |
agcagaagctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatccgagtcaaaaacaacgttgggaagaaaaccgtaaggtccatccccg |
32138671 |
T |
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| Q |
110 |
aataaaacaactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttc |
209 |
Q |
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| T |
32138672 |
aataaaacaactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttc |
32138771 |
T |
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| Q |
210 |
caagaccagccataccagaagcaccacttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgg |
309 |
Q |
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| T |
32138772 |
caagaccagccataccagaagcaccagttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgg |
32138871 |
T |
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| Q |
310 |
gttgaagccattagaggattggattgataaaacatcttcagcaagttcaccgctggtggc |
369 |
Q |
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| T |
32138872 |
gttgaagccattagaggattggattgataaaacatcttcagcaagttcaccgctggtggc |
32138931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 32147970 - 32148315
Alignment:
| Q |
18 |
ctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatctgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaac |
117 |
Q |
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| T |
32147970 |
ctgtgctaaagggattgatcaaaagcggtgtgtatgtgagtgacttagaatcaaaaacgacgttggggagaaaaccgtaaggtccatccccgaataaaac |
32148069 |
T |
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| Q |
118 |
aactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttccaagacca |
217 |
Q |
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| T |
32148070 |
aactccctttgaagaggaaagacaaatagcgaattttttagcgaagctaaaagccgaagctaattgagatggaagagctaatttgtttcttccaagacca |
32148169 |
T |
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| Q |
218 |
gccataccagaagcaccacttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgggttgaagc |
317 |
Q |
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| T |
32148170 |
gccataccagaagcaccacttgcaagtccttctagtaagaaagttcgtgcacatgagaataggaagcgtgaaaccatgacattttgtcctgggttgaagc |
32148269 |
T |
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| Q |
318 |
cattagaggattggattgataaaacatcttcagcaagttcaccgct |
363 |
Q |
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| T |
32148270 |
cattagaggattggattgataaaatatcttcagccagttcaccgct |
32148315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 127 - 351
Target Start/End: Original strand, 32126906 - 32127130
Alignment:
| Q |
127 |
tgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttccaagaccagccatacca |
226 |
Q |
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|||||| |||| ||||| ||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
32126906 |
tgaagaagaaaaacaaaaagcaaattttcttttgaaaataaaagcagaagctagttgagatggaagagcgattttggttcttccaagaccagccatgcca |
32127005 |
T |
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| Q |
227 |
gaagcaccacttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgggttgaagccattagagg |
326 |
Q |
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| T |
32127006 |
gaagcaccacctgcaagtcctcgtaataatgatgttggtgcgcatgaaaatagaaagcgtgaaacaacgacattttgtcctgtgttgaaaccgctagttg |
32127105 |
T |
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| Q |
327 |
attggattgataaaacatcttcagc |
351 |
Q |
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| T |
32127106 |
attggatggataaaacgtcttcagc |
32127130 |
T |
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