View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18200_low_21 (Length: 343)

Name: NF18200_low_21
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18200_low_21
NF18200_low_21
[»] chr4 (15 HSPs)
chr4 (1-337)||(37930554-37930892)
chr4 (1-55)||(43034332-43034387)
chr4 (1-55)||(38374973-38375028)
chr4 (1-55)||(56551582-56551637)
chr4 (1-54)||(13121560-13121614)
chr4 (1-54)||(22630351-22630405)
chr4 (9-55)||(19310516-19310563)
chr4 (1-55)||(21318243-21318298)
chr4 (1-51)||(21623413-21623464)
chr4 (7-55)||(9783921-9783970)
chr4 (8-55)||(16432947-16432995)
chr4 (1-48)||(24785459-24785507)
chr4 (1-48)||(24822759-24822807)
chr4 (7-54)||(47015559-47015607)
chr4 (8-55)||(49041971-49042019)
[»] chr5 (7 HSPs)
chr5 (1-55)||(6489023-6489078)
chr5 (1-55)||(11720910-11720964)
chr5 (1-55)||(15889427-15889482)
chr5 (1-55)||(22522791-22522846)
chr5 (1-46)||(6424902-6424948)
chr5 (1-55)||(31764380-31764434)
chr5 (7-55)||(40715939-40715988)
[»] chr2 (17 HSPs)
chr2 (1-55)||(24592836-24592891)
chr2 (1-55)||(29544643-29544698)
chr2 (1-54)||(30089065-30089119)
chr2 (1-54)||(30125669-30125723)
chr2 (11-55)||(10723965-10724010)
chr2 (1-55)||(2256987-2257042)
chr2 (1-55)||(10735821-10735876)
chr2 (1-55)||(26999126-26999181)
chr2 (1-55)||(30045469-30045524)
chr2 (1-55)||(30050632-30050687)
chr2 (1-55)||(30141676-30141731)
chr2 (1-55)||(31815877-31815932)
chr2 (1-54)||(41859868-41859922)
chr2 (1-46)||(43117189-43117235)
chr2 (7-47)||(12413515-12413556)
chr2 (7-47)||(12425575-12425616)
chr2 (7-55)||(24393267-24393316)
[»] chr1 (13 HSPs)
chr1 (1-55)||(33020033-33020088)
chr1 (3-55)||(14880846-14880899)
chr1 (1-55)||(3481576-3481632)
chr1 (4-55)||(16033440-16033492)
chr1 (4-55)||(41974780-41974832)
chr1 (1-55)||(17139507-17139562)
chr1 (1-55)||(32923834-32923889)
chr1 (1-55)||(41973271-41973326)
chr1 (1-55)||(42045362-42045417)
chr1 (9-54)||(12522110-12522156)
chr1 (7-55)||(6000133-6000182)
chr1 (7-47)||(22335380-22335421)
chr1 (9-44)||(50372362-50372398)
[»] chr6 (11 HSPs)
chr6 (1-52)||(14918293-14918345)
chr6 (1-55)||(34701163-34701218)
chr6 (4-52)||(29069502-29069551)
chr6 (1-55)||(8569725-8569780)
chr6 (1-54)||(1130801-1130855)
chr6 (1-54)||(12339767-12339821)
chr6 (1-45)||(8637437-8637482)
chr6 (4-55)||(12232172-12232224)
chr6 (27-55)||(12306364-12306392)
chr6 (8-55)||(14049874-14049922)
chr6 (1-52)||(20744154-20744206)
[»] chr3 (12 HSPs)
chr3 (8-55)||(8075808-8075856)
chr3 (1-55)||(25441490-25441545)
chr3 (5-55)||(8238584-8238635)
chr3 (1-55)||(38130949-38131004)
chr3 (1-55)||(45431964-45432019)
chr3 (13-54)||(45885468-45885510)
chr3 (11-55)||(25730428-25730473)
chr3 (7-55)||(32843252-32843301)
chr3 (4-55)||(1456530-1456582)
chr3 (8-55)||(12131663-12131711)
chr3 (3-54)||(34899115-34899167)
chr3 (8-55)||(48849753-48849801)
[»] chr7 (11 HSPs)
chr7 (1-54)||(8237623-8237677)
chr7 (1-55)||(5579709-5579764)
chr7 (1-55)||(16537526-16537581)
chr7 (1-55)||(16577850-16577905)
chr7 (1-55)||(16587757-16587812)
chr7 (1-55)||(16628081-16628136)
chr7 (1-55)||(27462426-27462481)
chr7 (8-52)||(14969527-14969574)
chr7 (8-52)||(15399003-15399050)
chr7 (7-54)||(10423983-10424031)
chr7 (1-40)||(42753432-42753472)
[»] scaffold0334 (1 HSPs)
scaffold0334 (1-55)||(5198-5253)
[»] chr8 (8 HSPs)
chr8 (1-55)||(1244695-1244750)
chr8 (5-55)||(2489700-2489751)
chr8 (1-55)||(8881291-8881346)
chr8 (1-55)||(12748917-12748972)
chr8 (1-55)||(32944830-32944885)
chr8 (1-54)||(11709002-11709056)
chr8 (1-50)||(39821900-39821950)
chr8 (7-55)||(32051522-32051571)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 37930892 - 37930554
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccacnnnnnnnnn-gaccatcaagtactctcattatgcaggacaacac 98  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||||    
T  37930892 tggtaggtacaatgcataatatatgcaaggtctgaggttcaaaccccgaccaccacaaaaaaaaaagaccatcaagtactctcattatgcaggacaacac 37930793  T
Q  99 ataatttcaactatgatacaacacataataaagtaataataatcaagaatgaatggctttcatgactacaatacattaaaataagcagaaataaataatg 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37930792 ataatttcaactatgatacaacacataataaagtaatactaatcaagaatgaatggctttcatgaccacaatacattaaaataagcagaaataaataatg 37930693  T
Q  199 aaacacaaataccatatgactattgaagacattttatcaaattcataagttacaaagtaacagaatgcaatgtaatcaaactcacttgtgaagctattct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37930692 aaacacaaataccatatgactattgaagacattttatcaaattcataacttacaaagtaacagaatgcaatgtaatcaaactcacttgtgaagctattct 37930593  T
Q  299 tgcagaatcattatcttgatgcatcattacagccatacc 337  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37930592 tgcagaatcattatcttgatgcatcattacagccatacc 37930554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43034387 - 43034332
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  43034387 tggtatggacaatgcataatatatgcaaggtctgaggttcaaaccccggccaccac 43034332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38374973 - 38375028
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | |||||||  ||||||||||||||||||||    
T  38374973 tggtagggacaatgcataatatatgcaaggtctggagttcaaaccccggccaccac 38375028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 56551637 - 56551582
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||| |||||||||||||||||||||||    
T  56551637 tggtaaggacaatgcataatatatgcaaggtccgaggttcaaaccccggccaccac 56551582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13121560 - 13121614
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||| ||||    
T  13121560 tggtagggacaatgcataatatatgcaaggtctgaagttcaaaccccggctacca 13121614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22630405 - 22630351
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccacca 54  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||| ||||||    
T  22630405 tggtagtgacaatgcataatatatgcaaggtctgaggttcaaaccccgaccacca 22630351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 19310563 - 19310516
Alignment:
Q  9 acaatgcataatatatacagg-tctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||||    
T  19310563 acaatgcataatatatacatgatctgaggttcaaactccggccaccac 19310516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21318298 - 21318243
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||||  ||||||||||||| |||||||    
T  21318298 tggtagggacaatgcataatatatgcaaggtctagggttcaaaccccgaccaccac 21318243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21623464 - 21623413
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggcca 51  Q
    |||||||||||||||||||||||| | |||||||||||| ||||| ||||||    
T  21623464 tggtagggacaatgcataatatatgcaaggtctgaggtttaaacctcggcca 21623413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 9783921 - 9783970
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||||  | ||||||||||||||||| ||||||||||    
T  9783921 ggacaatgcataatatatgtaaggtctgaggttcaaacctcggccaccac 9783970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 16432995 - 16432947
Alignment:
Q  8 gacaatgcataatatatacagg-tctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||| | | |||||||||||||||||| |||||||    
T  16432995 gacaatgcataatatatataagatctgaggttcaaaccccgaccaccac 16432947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24785507 - 24785459
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccgg 48  Q
    ||||| |||||||||||||||||||| ||||||| ||||| ||||||||    
T  24785507 tggtaaggacaatgcataatatatacaaggtctggggttcgaaccccgg 24785459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24822759 - 24822807
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccgg 48  Q
    ||||| |||||||||||||||||||| ||||||| ||||| ||||||||    
T  24822759 tggtaaggacaatgcataatatatacaaggtctggggttcgaaccccgg 24822807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 47015607 - 47015559
Alignment:
Q  7 ggacaatgcataatatatac-aggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||||||||||| ||||||| ||||||||| ||| ||||||    
T  47015607 ggacaatgcataatatatacaaggtctggggttcaaactccgaccacca 47015559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 49042019 - 49041971
Alignment:
Q  8 gacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||| || |||| | |||||||||||||||||||||    
T  49042019 gacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 49041971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6489023 - 6489078
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| || |||||| |||||||||||||||||||||    
T  6489023 tggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 6489078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11720910 - 11720964
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||| | |||||||||||||||||||||    
T  11720910 tggtagggacaatgcataatatatgcaaggtc-ggggttcaaaccccggccaccac 11720964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15889427 - 15889482
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||||  ||||||||||||| |||||||    
T  15889427 tggtagggacaatgcataatatatgcaaggtctagggttcaaaccccgaccaccac 15889482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22522846 - 22522791
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||| | |||||||||||||||||||||    
T  22522846 tggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 22522791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6424948 - 6424902
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaacccc 46  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||    
T  6424948 tggtagggacaatgcataatatatacaaggtccggggttcaaacccc 6424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31764434 - 31764380
Alignment:
Q  1 tggtagggacaatgcataatatatacaggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||||||||||| |||| |  ||||||||||||  |||||||    
T  31764434 tggtagggacaatgcataatatataaaggtatagggttcaaaccccaaccaccac 31764380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 40715988 - 40715939
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||| || |||| | |||||||||||||||||||||    
T  40715988 ggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 40715939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24592891 - 24592836
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| || |||||| |||||||||||||||||||||    
T  24592891 tggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 24592836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29544643 - 29544698
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||| | |||||||||||||||||||||    
T  29544643 tggtagggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 29544698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30089065 - 30089119
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||||||||||||||||| ||||| | |||||||||| |||||||||    
T  30089065 tggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccacca 30089119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30125669 - 30125723
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||||||||||||||||| ||||| | |||||||||| |||||||||    
T  30125669 tggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccacca 30125723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 10723965 - 10724010
Alignment:
Q  11 aatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  10723965 aatgcataatatatgcaaggtctgaggttcaaaccccggccaccac 10724010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2256987 - 2257042
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  2256987 tggtatggacaatgcataatatatgcaaggtctggggttcgaaccccggccaccac 2257042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10735876 - 10735821
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||| ||||||||||||| || |||| | |||||||||||||||||||||    
T  10735876 tggtagggacgatgcataatatatgcaaggtccggggttcaaaccccggccaccac 10735821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26999126 - 26999181
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||    
T  26999126 tggtagagacaatgcataatatatgcaaggtctgcggttcaaactccggccaccac 26999181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30045469 - 30045524
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||||| ||||  ||| |||||||| ||||||||||    
T  30045469 tggtagggacaatgcataatatatacaaggttcgagattcaaacctcggccaccac 30045524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30050632 - 30050687
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||||| ||||  ||| |||||||| ||||||||||    
T  30050632 tggtagggacaatgcataatatatacaaggttcgagattcaaacctcggccaccac 30050687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30141676 - 30141731
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||||| ||||  ||| |||||||| ||||||||||    
T  30141676 tggtagggacaatgcataatatatacaaggttcgagattcaaacctcggccaccac 30141731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31815932 - 31815877
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||| | ||||||||||||| |||||||    
T  31815932 tggtagggacaatgcataatatatgcaaggtccggggttcaaaccccgaccaccac 31815877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41859868 - 41859922
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccacca 54  Q
    ||||| ||||||||||||| |||| || |||||| ||||||||||||||||||||    
T  41859868 tggtatggacaatgcataaaatatgcaaggtctggggttcaaaccccggccacca 41859922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43117235 - 43117189
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaacccc 46  Q
    ||||| |||||||||||||||||| || |||||||||||||||||||    
T  43117235 tggtaaggacaatgcataatatatgcaaggtctgaggttcaaacccc 43117189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 12413515 - 12413556
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccg 47  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  12413515 ggacaatgcataatatatgcaaggtctgaggttcaaaccccg 12413556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 12425575 - 12425616
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccg 47  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  12425575 ggacaatgcataatatatgcaaggtctgaggttcaaaccccg 12425616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 24393267 - 24393316
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||| || |||||||||||| |||||||| ||||||    
T  24393267 ggacaatgcataatatatgcaaggtctgaggttcgaaccccggacaccac 24393316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33020088 - 33020033
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  33020088 tggtagggacaatgcataatatatgcaaggtctgaggttcaaaccccagccaccac 33020033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 14880846 - 14880899
Alignment:
Q  3 gtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||| |||||    
T  14880846 gtagggacaatgcataatatatgcaaggtctgaggttcaaatcccggcaaccac 14880899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3481576 - 3481632
Alignment:
Q  1 tggtagggacaa-tgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||| |||||||||||| || |||||| |||||||||||||||||||||    
T  3481576 tggtagggacaaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 3481632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 16033492 - 16033440
Alignment:
Q  4 tagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||||||| || |||||| ||||||||| |||||||||||    
T  16033492 tagggacaatgcataatatatgcaaggtctggggttcaaactccggccaccac 16033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 41974780 - 41974832
Alignment:
Q  4 tagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||| |||||||||||||| || ||| ||||||||||||||||||||||||    
T  41974780 tagggataatgcataatatatgcaaggtttgaggttcaaaccccggccaccac 41974832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 17139562 - 17139507
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||| | ||||||||||||| |||||||    
T  17139562 tggtagggacaatgcataatatattcaaggtccggggttcaaaccccgaccaccac 17139507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32923834 - 32923889
Alignment:
Q  1 tggtagggacaatgcataatatat-acaggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | |||||||| |||||||| ||| |||||||    
T  32923834 tggtagggacaatgcataatatatgaaaggtctgaagttcaaactccgaccaccac 32923889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41973271 - 41973326
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||| | ||||| |||||||||||||||    
T  41973271 tggtagggacaatgcataatatatgcaaggtccggggttcgaaccccggccaccac 41973326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42045417 - 42045362
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || ||||||  ||||||||||||||||||||    
T  42045417 tggtatggacaatgcataatatatgcaaggtctggagttcaaaccccggccaccac 42045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 12522156 - 12522110
Alignment:
Q  9 acaatgcataatatataca-ggtctgaggttcaaaccccggccacca 54  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||    
T  12522156 acaacgcataatatatacaaggtctgaggttcaaaccccgaccacca 12522110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 6000182 - 6000133
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||| || |||| |||||||||||||||| ||||||    
T  6000182 ggacaatgcataatatatgcaaggtccgaggttcaaaccccggacaccac 6000133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 22335380 - 22335421
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccg 47  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  22335380 ggacaatgcataatatatgcaaggtctgaggttcaaaccccg 22335421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 50372398 - 50372362
Alignment:
Q  9 acaatgcataatatata-caggtctgaggttcaaacc 44  Q
    ||||||||||||||||| |||||||||||||||||||    
T  50372398 acaatgcataatatatatcaggtctgaggttcaaacc 50372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14918345 - 14918293
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccac 52  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  14918345 tggtagggacaatgcataatatatacaaggtctggggttcaaaccccgaccac 14918293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34701163 - 34701218
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||| |||||||||||||||| || |||||||||||||||| |||||||||||    
T  34701163 tggtaggaacaatgcataatatatgcaaggtctgaggttcaaactccggccaccac 34701218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 29069502 - 29069551
Alignment:
Q  4 tagggacaatgcataatatat-acaggtctgaggttcaaaccccggccac 52  Q
    ||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  29069502 tagggacaatgcataatatatgaaaagtctgaggttcaaaccccggccac 29069551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8569725 - 8569780
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||| | |||||||||||||||||||||    
T  8569725 tggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 8569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1130801 - 1130855
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||||| ||| ||||| || |||||||| ||||||||||||||||||    
T  1130801 tggtagggacaatgtatagtatatgcaaggtctgagcttcaaaccccggccacca 1130855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12339767 - 12339821
Alignment:
Q  1 tggtagggacaatgcataatatatacag-gtctgaggttcaaaccccggccacca 54  Q
    ||||| |||||||| ||||||||||||  |||||||||| |||||||||||||||    
T  12339767 tggtatggacaatggataatatatacaaagtctgaggtttaaaccccggccacca 12339821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8637482 - 8637437
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccc 45  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||    
T  8637482 tggtagggacaatgcataatatatgcaaggtccgaggttcaaaccc 8637437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 12232224 - 12232172
Alignment:
Q  4 tagggacaatgcataatatatacag-gtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||||||| ||| ||||| ||||| ||||||| |||||||    
T  12232224 tagggacaatgcataatatatgcagtgtctggggttcgaaccccgaccaccac 12232172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 12306364 - 12306392
Alignment:
Q  27 aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||||||||    
T  12306364 aggtctgaggttcaaaccccggccaccac 12306392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 14049922 - 14049874
Alignment:
Q  8 gacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||| || |||||||||||||||  |||||||||||    
T  14049922 gacaatgcataatatatgcaaggtctgaggttcaaattccggccaccac 14049874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20744154 - 20744206
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccac 52  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||||| ||||    
T  20744154 tggtatggacaatgcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8075808 - 8075856
Alignment:
Q  8 gacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  8075808 gacaatgcataatatatgcaaggtctgaggttcaaaccccggccaccac 8075856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25441545 - 25441490
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||||| |||||||||||||||||||||    
T  25441545 tggtatggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 25441490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 8238584 - 8238635
Alignment:
Q  5 agggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||||||||    
T  8238584 agggacaatgcataatatatgcaaggtctggggttcaaactccggccaccac 8238635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38131004 - 38130949
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||| | |||||||||||||||||||||    
T  38131004 tggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 38130949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45431964 - 45432019
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | ||||| | ||||||||||| |||||||||    
T  45431964 tggtagggacaatgcataatatatgcaaggtccggggttcaaaccctggccaccac 45432019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 45885510 - 45885468
Alignment:
Q  13 tgcataatatataca-ggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  45885510 tgcataatatatgcaaggtctgaggttcaaaccccggccacca 45885468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 25730428 - 25730473
Alignment:
Q  11 aatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  25730428 aatgcataatatatacaaggtctggggttcgaaccccggccaccac 25730473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 32843301 - 32843252
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||||    
T  32843301 ggacaatgcataaaatatgcaaggtctggggttcaaaccccggccaccac 32843252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 1456582 - 1456530
Alignment:
Q  4 tagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||| ||||||||| || ||||||||||||||| | ||||||||||    
T  1456582 tagggacaatgtataatatatgcaaggtctgaggttcaaaactcggccaccac 1456530  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 12131711 - 12131663
Alignment:
Q  8 gacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||||| |||| ||||||| |||||||| |||||||    
T  12131711 gacaatgcataatatatacaaggtatgaggtttaaaccccgaccaccac 12131663  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34899115 - 34899167
Alignment:
Q  3 gtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||||||||||||| | ||||| | ||||||||||||| ||||||    
T  34899115 gtagggacaatgcataatatatgcaaggtccggggttcaaaccccgaccacca 34899167  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 48849801 - 48849753
Alignment:
Q  8 gacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||||||| || |||| | |||||||||||||||||||||    
T  48849801 gacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 48849753  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8237677 - 8237623
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccacca 54  Q
    ||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  8237677 tggtaaggacaatgcataatatatacaaagtccgaggttcaaaccccggccacca 8237623  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5579709 - 5579764
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||| |||||||||||| || |||||| ||||||||||||| |||||||    
T  5579709 tggtagggacagtgcataatatatgcaaggtctggggttcaaaccccgaccaccac 5579764  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16537581 - 16537526
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||| ||| ||||||    
T  16537581 tggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccac 16537526  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16577905 - 16577850
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||| |||||||||| | ||||||| |||||||||| ||||||||||    
T  16577905 tggtagggacaatacataatatatgcaaggtctggggttcaaacctcggccaccac 16577850  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16587757 - 16587812
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||||||| |||||||||| | ||||||| |||||||||| ||||||||||    
T  16587757 tggtagggacaatacataatatatgcaaggtctggggttcaaacctcggccaccac 16587812  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16628081 - 16628136
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||| ||| ||||||    
T  16628081 tggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccac 16628136  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27462481 - 27462426
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||| | |||||||||||||||||||||    
T  27462481 tggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 27462426  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 14969574 - 14969527
Alignment:
Q  8 gacaatgcataatatatac---aggtctgaggttcaaaccccggccac 52  Q
    |||||||||||| ||||||   ||||||||||||||||||||||||||    
T  14969574 gacaatgcataaaatatacgcaaggtctgaggttcaaaccccggccac 14969527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 15399050 - 15399003
Alignment:
Q  8 gacaatgcataatatatac---aggtctgaggttcaaaccccggccac 52  Q
    |||||||||||| ||||||   ||||||||||||||||||||||||||    
T  15399050 gacaatgcataaaatatacgcaaggtctgaggttcaaaccccggccac 15399003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 10423983 - 10424031
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccggccacca 54  Q
    |||||| |||||||||||| | |||||||||||| ||||||||||||||    
T  10423983 ggacaacgcataatatatataaggtctgaggttcgaaccccggccacca 10424031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42753472 - 42753432
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttca 40  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  42753472 tggtagggacaatgtataatatatacaaggtctgaggttca 42753432  T

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Target: scaffold0334 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5198 - 5253
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||||||||||||||||||  |||||||    
T  5198 tggtatggacaatgcataatatatgcaaggtctgaggttcaaaccccaaccaccac 5253  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1244750 - 1244695
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||||| ||||||| ||||| |||||||| ||||||    
T  1244750 tggtaaggacaatgcataatatatacaaggtctggggttcgaaccccggacaccac 1244695  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 2489700 - 2489751
Alignment:
Q  5 agggacaatgcataatatatacag-gtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||| ||  |||||||||||||||| ||||||||||    
T  2489700 agggacaatgcataatatatgcaacgtctgaggttcaaacctcggccaccac 2489751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8881291 - 8881346
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||||||||| | |||||   |||||||||||||||||||||    
T  8881291 tggtagggacaatgcataatatatgcaaggtccagggttcaaaccccggccaccac 8881346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12748917 - 12748972
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| |||||||||||||||||| || |||| | |||||||||||||||||||||    
T  12748917 tggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 12748972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32944885 - 32944830
Alignment:
Q  1 tggtagggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    ||||| ||||||||||||| |||| || |||||||||||||||||||| |||||||    
T  32944885 tggtatggacaatgcataaaatatgcaaggtctgaggttcaaaccccgaccaccac 32944830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11709002 - 11709056
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggccacca 54  Q
    |||||||||||||||||||||||| | ||||| || |||||||||||| ||||||    
T  11709002 tggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccgaccacca 11709056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39821900 - 39821950
Alignment:
Q  1 tggtagggacaatgcataatatatac-aggtctgaggttcaaaccccggcc 50  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||| ||||    
T  39821900 tggtagggacaatgcataatatatgcaaggtctggggttcaaacccaggcc 39821950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 32051571 - 32051522
Alignment:
Q  7 ggacaatgcataatatataca-ggtctgaggttcaaaccccggccaccac 55  Q
    |||||||||||||||||| || |||| | |||||||||||||||||||||    
T  32051571 ggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 32051522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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