View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_28 (Length: 297)
Name: NF18200_low_28
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 5811805 - 5811540
Alignment:
| Q |
18 |
agatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811805 |
agatctagagggccaagaagatattttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
5811706 |
T |
|
| Q |
118 |
gttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttatta |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5811705 |
gttaagaaagaagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttatta |
5811606 |
T |
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| Q |
218 |
tttttctactgaataaatatgtcttctgatagttaattttttatcttactaatatctttcaatgat |
283 |
Q |
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|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
5811605 |
tttttctactgaatgaatatgtcttccgacagttaattttttatcttactaatatctttcaatgat |
5811540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 37743342 - 37743205
Alignment:
| Q |
50 |
aggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgact |
149 |
Q |
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||||||||||||||||||||||||||| || |||||| |||||||||| | |||||||||||||||||| ||||||| |||| ||||| |||||||||| |
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| T |
37743342 |
aggatgttgccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgact |
37743243 |
T |
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| Q |
150 |
gtttgtacgtaatctgccatacacgaccacgtactttc |
187 |
Q |
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| T |
37743242 |
gtttgtccgtaatctgccatattcgaccacgtaatttc |
37743205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 37764557 - 37764393
Alignment:
| Q |
18 |
agatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
117 |
Q |
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||||||||| | ||||||| ||||| | ||| ||||||| ||||||||||||||||||| || | |||| |||||||||| | ||||||||||||||||| |
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| T |
37764557 |
agatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataagtctcaagtgaattcaactgaggaagaggggcaattatcaaatccagaa |
37764458 |
T |
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| Q |
118 |
gttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgta |
182 |
Q |
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| T |
37764457 |
gataagaaaggagtttctgagccgtgtcgactgtttgtccgtaatctgccatattcgaccacgta |
37764393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 38601759 - 38601928
Alignment:
| Q |
18 |
agatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaa |
117 |
Q |
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||||||||| | ||||||| ||||| | ||| ||||||| ||||||||||||||||||| || |||||| |||||||||| | ||||||||||||||||| |
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| T |
38601759 |
agatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaa |
38601858 |
T |
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| Q |
118 |
gttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttc |
187 |
Q |
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||||||| |||| ||||| |||||||||||||||| | |||||||||||| |||||||||| |||| |
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| T |
38601859 |
tataagaaaggagtttctgagccgtgtcgactgtttgtccttaatctgccatattcgaccacgtaatttc |
38601928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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