View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_30 (Length: 289)
Name: NF18200_low_30
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 3759111 - 3758845
Alignment:
| Q |
8 |
ccaagaatatacaccacttctaccagcttccatataatgggaaacccacattttcttgcaataccattcccaattctaggacatatgaatccccttatgc |
107 |
Q |
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| T |
3759111 |
ccaataatttacaccacttctaccagcttccatataatgggaaacccacattttcttgcaataccattcccaattctaggacatatgaatccccttatgc |
3759012 |
T |
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| Q |
108 |
aattctctcatgttttagccaaacatggatgcaaaatcactttcttgacttcagatgaaaattacaataaaatgaagacaacttcaattattggtgagca |
207 |
Q |
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| T |
3759011 |
aattctctcatgttttagccaaacatggatgcaaaatcactttcttgacttcagatgaaaattacaataaaatgaagacaacttcaattattggtgagca |
3758912 |
T |
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| Q |
208 |
aggaaaagtcaaggaatcaaacataaatttagtatctctcccagatggtgtgagtcctcaagatgat |
274 |
Q |
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| T |
3758911 |
aggaaaagtcaaggaatcaaacataaatttagtatctctcccagatggtgtgagtcctcaagatgat |
3758845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 3771066 - 3770986
Alignment:
| Q |
71 |
ccattcccaattctaggacatatgaatccccttatgcaattctctcatgttttagccaaacatggatgcaaaatcactttc |
151 |
Q |
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| T |
3771066 |
ccatacccaattccaggtcatataaatcccctcatgcaattatgtcatgttttagccaaacatggctgcaagatcactttc |
3770986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 3791188 - 3791094
Alignment:
| Q |
56 |
cattttcttgcaataccattcccaattctaggacatatgaatccccttatgcaattctctcatgttttagccaaacatggatgcaaaatcacttt |
150 |
Q |
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| T |
3791188 |
cattttcttgctataccatatccagttcaaggacatgtgaatccccttatgcaattctcacaaattctagccaaccatggttgcaaagtcacttt |
3791094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 3783508 - 3783414
Alignment:
| Q |
56 |
cattttcttgcaataccattcccaattctaggacatatgaatccccttatgcaattctctcatgttttagccaaacatggatgcaaaatcacttt |
150 |
Q |
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| T |
3783508 |
cattttcttgttattccatacccaatagcaggtcatgtgaatcctcttatgcaattatctcatcttttatccaaacatggctgcaaaatcacttt |
3783414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 3798169 - 3798263
Alignment:
| Q |
56 |
cattttcttgcaataccattcccaattctaggacatatgaatccccttatgcaattctctcatgttttagccaaacatggatgcaaaatcacttt |
150 |
Q |
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| T |
3798169 |
cattttcttgttataccatttccagttcaaggacatgttaacccccttatgcaattctcacaagttctagccaaacatggttgcaaggtcacttt |
3798263 |
T |
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