View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_33 (Length: 264)
Name: NF18200_low_33
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 26578690 - 26578455
Alignment:
| Q |
12 |
gagatgaatgtgtatattgatgatgtaatggtcaaatacattcccttccaaaaccatttgttggaactagagaaaactttcaaaaagtatgaggctatat |
111 |
Q |
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| T |
26578690 |
gagatgaatgtgtatattgatgatgtaatggtcaaatacattcccttccaaaaccatttgttggaactagagaagactttcaaaaactatgaggctatat |
26578591 |
T |
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| Q |
112 |
ggtttaaagatgaatccagttaaatgcacatttggagtatcatctggtaacttcattggttccttagtacacaatnnnnnnntttaattggacaagaaca |
211 |
Q |
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| T |
26578590 |
ggtttaaagatgaatccagctaaatgcatatttggagtatcatctggtaacttcattggttccttagtacacaataaaaaaaattaattggacaagaaca |
26578491 |
T |
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| Q |
212 |
agggtaaagctatcttggaggcaagaccctcaaaca |
247 |
Q |
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| T |
26578490 |
aaggtaaagctatcttggaggcaagaccctcaaaca |
26578455 |
T |
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