View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_34 (Length: 260)
Name: NF18200_low_34
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 9109682 - 9109474
Alignment:
| Q |
24 |
agtggacaagagcgaactaatttatctaatttagatagtaagattgttattttgtttgtgtaaatcaattactcggtactcccaatcgattcaacttagt |
123 |
Q |
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| T |
9109682 |
agtggacaagaatgaactaatttatctaatttagatagtaagattgttattttgtttgtgtaaatcaattactcggtactcccaatcgattcaacttagt |
9109583 |
T |
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| Q |
124 |
gaaaatagaatgaattgatattttctaataaatgacataaaaaatatatttgaatttgaatacaatcaaaatttcttatttttctagctttttgtcatac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
9109582 |
gaaaatagaatgaattgatattttctaataaatgacataaaaaatatatttgaatttgaatacaatcaaaatttcttatttttctaactttttgtcaaac |
9109483 |
T |
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| Q |
224 |
acaatatta |
232 |
Q |
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| T |
9109482 |
acaatatta |
9109474 |
T |
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