View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_36 (Length: 245)
Name: NF18200_low_36
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 21260030 - 21260183
Alignment:
| Q |
7 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagcaaaaataggtttttcacttgtatatatagaatacctttacactc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21260030 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactc |
21260129 |
T |
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| Q |
107 |
ttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
21260130 |
ttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 21264611 - 21264764
Alignment:
| Q |
7 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagcaaaaataggtttttcacttgtatatatagaatacctttacactc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21264611 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactc |
21264710 |
T |
|
| Q |
107 |
ttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
21264711 |
ttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 6847754 - 6847908
Alignment:
| Q |
7 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagcaaaaataggtttttcacttgtatatatagaatacctttacactc |
106 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6847754 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactc |
6847853 |
T |
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| Q |
107 |
ttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgacaa |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
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|
| T |
6847854 |
ttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaa |
6847908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 6843151 - 6843296
Alignment:
| Q |
7 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagcaaaaataggtttttcacttgtatatatagaatacctttacactc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
6843151 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactc |
6843250 |
T |
|
| Q |
107 |
ttgtaatgtagatttggaaagaaataaaatgagacctactctatca |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6843251 |
ttgtaatgtagatttggaaagaaataaaatgagacctactgtatca |
6843296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 47805183 - 47805337
Alignment:
| Q |
7 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagcaaaaataggtttttcacttgtatatatagaatacctttacactc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47805183 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactc |
47805282 |
T |
|
| Q |
107 |
ttgtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgacaa |
161 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
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|
| T |
47805283 |
ttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacaa |
47805337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 47800601 - 47800746
Alignment:
| Q |
7 |
gaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagcaaaaataggtttttcacttgtatatatagaatacctttacactc |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47800601 |
gaatcatagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactc |
47800700 |
T |
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| Q |
107 |
ttgtaatgtagatttggaaagaaataaaatgagacctactctatca |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47800701 |
ttgtaatgtagatttggaaagaaataaaatgagacctactgtatca |
47800746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 29269788 - 29269829
Alignment:
| Q |
199 |
acaagagccataaagtgttgttgctgctacacaggttctgct |
240 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| |
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| T |
29269788 |
acaagagccatacagtgttgttgctgctacacaagttctgct |
29269829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 31289581 - 31289542
Alignment:
| Q |
199 |
acaagagccataaagtgttgttgctgctacacaggttctg |
238 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||| |
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| T |
31289581 |
acaagagccatacagtgttgtttctgctacacaggttctg |
31289542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 26853986 - 26853949
Alignment:
| Q |
199 |
acaagagccataaagtgttgttgctgctacacaggttc |
236 |
Q |
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|||||||||||| |||||||||||||||||||| |||| |
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| T |
26853986 |
acaagagccatacagtgttgttgctgctacacaagttc |
26853949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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