View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18200_low_39 (Length: 238)

Name: NF18200_low_39
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18200_low_39
NF18200_low_39
[»] scaffold0130 (1 HSPs)
scaffold0130 (170-237)||(18767-18834)
[»] chr5 (1 HSPs)
chr5 (170-237)||(40572068-40572135)
[»] chr1 (1 HSPs)
chr1 (170-237)||(19913574-19913641)
[»] chr4 (6 HSPs)
chr4 (52-112)||(24091235-24091295)
chr4 (105-163)||(24091627-24091685)
chr4 (52-112)||(24087173-24087233)
chr4 (105-163)||(24087500-24087558)
chr4 (18-52)||(24087065-24087099)
chr4 (18-52)||(24091127-24091161)
[»] chr3 (1 HSPs)
chr3 (170-237)||(10776638-10776705)


Alignment Details
Target: scaffold0130 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 18767 - 18834
Alignment:
Q  170 aatagcctcgtgattggacaaatcgatcctcgaagctggattggtattcgccagaattgttcgccaaa 237  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18767 aatagcctcgtgtttggacaaatcgatcatcgaagctggattggtattcgccagaattgttcgccaaa 18834  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 40572068 - 40572135
Alignment:
Q  170 aatagcctcgtgattggacaaatcgatcctcgaagctggattggtattcgccagaattgttcgccaaa 237  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  40572068 aatagcctcgtgattggacaaattgatcgtcgaagctggattggtattcgccagaattgttcgccaaa 40572135  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 19913574 - 19913641
Alignment:
Q  170 aatagcctcgtgattggacaaatcgatcctcgaagctggattggtattcgccagaattgttcgccaaa 237  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  19913574 aatagcctcgtgattggacaaattgatcgtcgaagctggattggtattcgccagaattgttcgccaaa 19913641  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 24091235 - 24091295
Alignment:
Q  52 caaaaaataatataacatctaaggggagtataatatcacgaatatcataataactgcaaaa 112  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24091235 caaaaaataatataacatctgaggggagtataatatcacgaatatcataataactgcaaaa 24091295  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 24091627 - 24091685
Alignment:
Q  105 ctgcaaaaagaaaaaccagacaactgctatggactggccgagatggacgaacccgctga 163  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24091627 ctgcaaaaagaaaaaccagacaattgctatggactggccgagatggacgaacccgctga 24091685  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 24087173 - 24087233
Alignment:
Q  52 caaaaaataatataacatctaaggggagtataatatcacgaatatcataataactgcaaaa 112  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  24087173 caaaaaataatataacatctgaggggagtataatatcacgaatatcataataactgaaaaa 24087233  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 24087500 - 24087558
Alignment:
Q  105 ctgcaaaaagaaaaaccagacaactgctatggactggccgagatggacgaacccgctga 163  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  24087500 ctgcaaaaagaaaaactagacaattgctatggactggccgagatggacgaacccgctga 24087558  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 24087065 - 24087099
Alignment:
Q  18 taaccatcacaaagaccgacagtattatccagcgc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  24087065 taaccatcacaaagaccgacagtattatccagcgc 24087099  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 24091127 - 24091161
Alignment:
Q  18 taaccatcacaaagaccgacagtattatccagcgc 52  Q
    |||||||||||||||||||||||||||||||||||    
T  24091127 taaccatcacaaagaccgacagtattatccagcgc 24091161  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 10776638 - 10776705
Alignment:
Q  170 aatagcctcgtgattggacaaatcgatcctcgaagctggattggtattcgccagaattgttcgccaaa 237  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||||| ||||||||    
T  10776638 aatagcctcgtgattggacaaattgatcttcgaagctggattgatattcgctagaattgctcgccaaa 10776705  T

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