View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_4 (Length: 631)
Name: NF18200_low_4
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_4 |
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| [»] scaffold0178 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 23440152 - 23440794
Alignment:
| Q |
1 |
acaaataaataactttgttgatgaatatcccgaatcactcgtgacgtaatttatgttgtgcccaaactaatcaaatcacataacttttctgtacaataaa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23440152 |
acaaataaataactttgttgatgaaaatcccgaatcactcgtgacgtaatttatgttgtgcccaaactaatcaaatcacataacttttctgtacaataaa |
23440251 |
T |
|
| Q |
101 |
tttcataattttgtaactaaattgatgtataactactactataagagttatcttttagaggaattaa-ttccaaaacctcatctgcttaataaatttcta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23440252 |
tttcataattttgtaactaaattgatgtataactactactataagagttattttttagaggaattaaattccaaaacctcatctgcttaataaatttcta |
23440351 |
T |
|
| Q |
200 |
att-----------ctctaaactatttagaggttttggtcaaacaataataaattacttag--gtttttaaatgagtacttatgaatctggatgtgtttt |
286 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
23440352 |
attatactataattctctaaactatttagaggttttggtcaaacaataataaattacttagaggtttttaaatgagt---tatgaatctggatgtgtttt |
23440448 |
T |
|
| Q |
287 |
ttcaaaagatgtgttgacaacaagtgtccaacttattatagttacacttcagtaactgcctatagaacttaatttaataaatttaacggttgaatataaa |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| |
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| T |
23440449 |
ttcaaaagatgtgttgacaacaagtgtccaacttattatagatacacttcagtaactacctatagaacataatttaataaatttaaccgttgaatataaa |
23440548 |
T |
|
| Q |
387 |
gttctaggaaa------------tatagaacatatgctaaaacatagaatatttttcttcccaagaactaaaacatacacatatagttacacctttaata |
474 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23440549 |
gttctaggtaaatatatcaaacatatagaacatatgctaaaacatagaatatttttcttcccaagaactaaaatatacacatatagttacacctttaata |
23440648 |
T |
|
| Q |
475 |
actcatcaa-ttttactaaaacatatataccaacaaatgtctaaattgtttaaagtttttctccacatcagcgttgcacccttcttacttcggcgttccc |
573 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23440649 |
actcatcaaattttactaaaacatatataccaacaaatgtctaaattgtttaaagtttttctccacatcagcgttgcacccttcttacttcggcgttccc |
23440748 |
T |
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| Q |
574 |
tctgtatttccagttcgtcgtatttaccgtcgtcgttcacaggttc |
619 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23440749 |
tctgtatttccagttcatcgtatttaccgtcgtcgttcacaggttc |
23440794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 17665260 - 17665172
Alignment:
| Q |
530 |
ttttctccacatcagcgttgcacccttcttacttcggcgttccctctgtatttccagttcgtcgtatttaccgtcgtcgttcacaggttc |
619 |
Q |
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|||||||| ||||| |||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
17665260 |
ttttctccgcatcactgttgcacccttcttccttcggcattccatctgtatttccagttcgtcgta-ttaccgttgtcgttcacaggttc |
17665172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 8589875 - 8589749
Alignment:
| Q |
21 |
atgaatatcccgaatcactcgtgacgtaatttatgttgtgcccaaactaatcaaatcacataacttttctgtacaataaatttcataattttgtaactaa |
120 |
Q |
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||||||||||||||| | | || | ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||| |||| ||||||| |
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| T |
8589875 |
atgaatatcccgaatgattggtatcataatttatgttgtatccaaacagatcaaatcacataactttttcgtagtataaatttcag--ttttctaactaa |
8589778 |
T |
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| Q |
121 |
attgatgtataactactactataagagtt |
149 |
Q |
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||| ||||||||||||||||| ||||||| |
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| T |
8589777 |
attaatgtataactactactagaagagtt |
8589749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 10485971 - 10486005
Alignment:
| Q |
490 |
taaaacatatataccaacaaatgtctaaattgttt |
524 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10485971 |
taaaacatatataccaacaaatgtctaaattgttt |
10486005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 10460131 - 10460165
Alignment:
| Q |
490 |
taaaacatatataccaacaaatgtctaaattgttt |
524 |
Q |
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| T |
10460131 |
taaaacatatataccaacaaatgtttaaattgttt |
10460165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 8589504 - 8589463
Alignment:
| Q |
294 |
gatgtgttgacaacaagtgtccaacttattatagttacactt |
335 |
Q |
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||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
8589504 |
gatgtgttgacaacaagtgtcaaacttactatacttacactt |
8589463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 533 - 619
Target Start/End: Complemental strand, 19974 - 19888
Alignment:
| Q |
533 |
tctccacatcagcgttgcacccttcttacttcggcgttccctctgtatttccagttcgtcgtatttaccgtcgtcgttcacaggttc |
619 |
Q |
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||||||||||| | |||||||||| || || |||||||||| || ||||||||||||||| |||| |||||| |||||||||||| |
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| T |
19974 |
tctccacatcacctttgcaccctttttcttttagcgttccctcagtctttccagttcgtcgtctttagcgtcgttgttcacaggttc |
19888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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