View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18200_low_41 (Length: 225)

Name: NF18200_low_41

Description: NF18200

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18200_low_41

[»] chr7 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 147; E-Value: 1e-77

Query Start/End: Original strand, 61 - 207

Target Start/End: Original strand, 37531740 - 37531886

Alignment:

Q	61	aaatacttacttgcaaatggttattccgagacagtatagagcaattccactaaagtaacaaccaattccatcccaaggaatcattttcatccagcttcaa	160	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37531740	aaatacttacttgcaaatggttattccgagacagtatagagcaattccactaaagtaacaaccaattccatcccaaggaatcattttcatccagcttcaa	37531839	T

Q	161	tggtgatcaatactacttccaatcaccaacatgcaaaatcattccaa	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37531840	tggtgatcaatactacttccaatcaccaacatgcaaaatcattccaa	37531886	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 166 - 207

Target Start/End: Original strand, 44685737 - 44685778

Alignment:

Q	166	atcaatactacttccaatcaccaacatgcaaaatcattccaa	207	Q
		\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	44685737	atcaatattactaccaatcaccaacatgcaaaattattccaa	44685778	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]