View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_43 (Length: 205)
Name: NF18200_low_43
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 40329028 - 40328856
Alignment:
| Q |
18 |
atattatatataaataacattataatatgtattccaaatgtagatctagtcacagaatttttggttcttgttcctcaacatatttttagcaaaaatatat |
117 |
Q |
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| T |
40329028 |
atattatatataaataacattataatatgtattccaaatgtagatctagtcacagagtttttggttcttgttcctcaatatatttttagcaaaaatatat |
40328929 |
T |
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| Q |
118 |
aactatataaatannnnnnncttcaaacctacctcatgcttagcatcccatagggttttcccagaggctctctg |
191 |
Q |
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| T |
40328928 |
aactatataaata-ttttttcttcaaacctacctcatgcttagcatcccatagggttttcccagaggctctctg |
40328856 |
T |
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