View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18200_low_6 (Length: 614)
Name: NF18200_low_6
Description: NF18200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18200_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 235 - 606
Target Start/End: Complemental strand, 8903751 - 8903374
Alignment:
| Q |
235 |
catcacaattacctttgaagaagttcaggtttattgagcaacccggatccgatgtaaatggggtagctccgattacccaaatcaacgttaacaatggtgg |
334 |
Q |
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| T |
8903751 |
catcacaattacctttgaagaagttcaggtttattgagcaacccggatccgatgtaaatggggtagctccgattacccaaatcaacgttaacaatggtgg |
8903652 |
T |
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| Q |
335 |
gaacaccaggttggatttttgctgaaaaggggtccatgagttgagaggaactagcgcatattggtgacctaagaggtgtagaaagagagannnnnnnagg |
434 |
Q |
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| T |
8903651 |
gaacaccaggttggatttttgctgaaaaggggtccatgagttgagaggaactagcgcatattggtgacctaagaggtgtagaaagagagatttttttagg |
8903552 |
T |
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| Q |
435 |
aaaaaggttggtggggtgaggggagaaagagtgggggtgtagaaagttaggattttgaagggaggagaggtgaattggttgttgtttgagggaggg---- |
530 |
Q |
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| T |
8903551 |
aaaaaggttggtggagtgaggggagaaagagtgggggtgtagaaagttaggattttgaagggaggagaggtgaattggttgttgtttgagggagggggag |
8903452 |
T |
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| Q |
531 |
--ggagatggagaattgggtgggtgtggaagccatcagaattggaattggaattttggtggttggtgattgtagaaga |
606 |
Q |
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| T |
8903451 |
atggagatggagaattgggtgggtgtggaagccatcggaattggaattggaatttcggtggttggtgattgtagaaga |
8903374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 8903971 - 8903798
Alignment:
| Q |
15 |
aatatctacagggtgcaatttaattggatacacactttctttcnnnnnnnnnnnnnnnnnnttggatacatacttaaaagtatacaacttaatccttaat |
114 |
Q |
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| T |
8903971 |
aatatctacagggtgcaatttaattggatacatactttctttcaaaaaaaaaaaaaaaacattggatacatacttaaaagtatacaacttaaaccttaat |
8903872 |
T |
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| Q |
115 |
tgaaaattgataacgtgaaattgcttgcaactgtaagtctgtcactactaatttactaatcatgaaacataggc |
188 |
Q |
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| T |
8903871 |
tgaaaattgataacgtgaaattgcttgcaactgtaagtctgtcactaccaatttactaatcatgaaacataggc |
8903798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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