View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18201_high_1 (Length: 527)
Name: NF18201_high_1
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18201_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 151 - 499
Target Start/End: Complemental strand, 4505734 - 4505372
Alignment:
| Q |
151 |
aagtggtggatataatcaaagaaattattggaattgacttcaaagtacagttttcatgacctatt-gttacccgctcatgaaattgatcccttcatttaa |
249 |
Q |
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| T |
4505734 |
aagtggtagatataatcaaaaaaattattggaattgacttcaaagtacagttttgatgaccgatttgttacccgctcctgaaattgatcccttcaattaa |
4505635 |
T |
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| Q |
250 |
aactt---tggttttggttattttatccaattttaaactaaaaacagtgatgt-------tttaaatgacctaccataaaatctgattatgtgaaattat |
339 |
Q |
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| T |
4505634 |
aacttatttggttttggtcatttcatccaattttaaactaaaaatagtgatgtgacatgttttaaatgacctaccataaaatctgattatgtgaaataat |
4505535 |
T |
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| Q |
340 |
caacaccccataaaagataataagaaaacatgctaaaactttagattcggtttaagaaatatattgta-nnnnnnnnnnnnngaagg-agaaatatattg |
437 |
Q |
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| T |
4505534 |
caacactccataaaaaataataagaaaacatgctaaaactttagattcggtttaagaaatatattgtattttttttttttttgaaggaagaaatatattg |
4505435 |
T |
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| Q |
438 |
tattctcactaatgactcttggtgatgcttactgtatttaatttgc-ttgatgtgtcaaatac |
499 |
Q |
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| T |
4505434 |
tattctcactaatgcctcttggtgatgcttactgtatttaatttgctttgatgtgtcaaatac |
4505372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 4505910 - 4505878
Alignment:
| Q |
14 |
attttatctttgatgctaaaaataaattaccag |
46 |
Q |
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| T |
4505910 |
attttacctttgatgctaaaaataaattaccag |
4505878 |
T |
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