View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18201_high_3 (Length: 430)

Name: NF18201_high_3
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18201_high_3
NF18201_high_3
[»] chr3 (19 HSPs)
chr3 (17-426)||(679210-679620)
chr3 (17-292)||(751017-751290)
chr3 (290-426)||(747402-747538)
chr3 (297-413)||(7324687-7324803)
chr3 (299-426)||(2501817-2501944)
chr3 (297-414)||(2491754-2491871)
chr3 (294-414)||(9594898-9595018)
chr3 (297-410)||(9566094-9566207)
chr3 (306-410)||(7443269-7443373)
chr3 (297-404)||(9562235-9562342)
chr3 (297-414)||(2474777-2474895)
chr3 (305-414)||(754888-754997)
chr3 (17-290)||(2632504-2632760)
chr3 (309-414)||(2644633-2644738)
chr3 (309-414)||(2659420-2659525)
chr3 (17-90)||(9564836-9564909)
chr3 (317-414)||(7334560-7334657)
chr3 (290-414)||(2631014-2631138)
chr3 (297-414)||(2476309-2476426)


Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 679210 - 679620
Alignment:
Q  17 aacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnn-tgaaaatgaggca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           |||||||||||||    
T  679210 aacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctcagaactagaaagaaaaaaaaaaatgaaaatgaggca 679309  T
Q  116 tataactatatttcaaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagc 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679310 tataactacatttcaaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagc 679409  T
Q  216 aagtgttgaaagaatctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679410 aagtgttgaaagaatctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattctt 679509  T
Q  316 gtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagcttg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  679510 gtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagctta 679609  T
Q  416 atgatgtccat 426  Q
     ||||||||||    
T  679610 gtgatgtccat 679620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 751017 - 751290
Alignment:
Q  17 aacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||    
T  751017 aacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaaa--aaaaataaatgaaaatgaggcat 751114  T
Q  117 ataactatatttcaaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagca 216  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751115 agaactatatttcaaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagca 751214  T
Q  217 agtgttgaaagaatctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaaat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751215 agtgttgaaagaatctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaaat 751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 290 - 426
Target Start/End: Original strand, 747402 - 747538
Alignment:
Q  290 aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc 389  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||  |||||    
T  747402 aataatgtgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaacaacgaccttataattatc 747501  T
Q  390 aatgaaatgatcatatccaaagcttgatgatgtccat 426  Q
    |||||||||||||||||||||||||  ||||||||||    
T  747502 aatgaaatgatcatatccaaagcttagtgatgtccat 747538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 413
Target Start/End: Original strand, 7324687 - 7324803
Alignment:
Q  297 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 396  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||| ||| |  ||||  |||||||||||||  |||||||  |||||||| |||    
T  7324687 tgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaactttatttttggaagaaacaacaatgaccttatagttatcaattaaa 7324786  T
Q  397 tgatcatatccaaagct 413  Q
    ||||| || ||||||||    
T  7324787 tgatcgtacccaaagct 7324803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 426
Target Start/End: Complemental strand, 2501944 - 2501817
Alignment:
Q  299 ggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatg 398  Q
    ||||| |||||||  || |||||||||||  ||||||||||||||| | ||| || |||||   |||||||||||  |||||||  ||||||||||||||    
T  2501944 ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaacaatgaccttataattatcaatgaaatg 2501845  T
Q  399 atcatatccaaagcttgatgatgtccat 426  Q
    ||||||||||||||||  ||||||||||    
T  2501844 atcatatccaaagcttagtgatgtccat 2501817  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 2491871 - 2491754
Alignment:
Q  297 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 396  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||| ||||| ||| || ||||| ||||||||| |||  |||||||  | ||||||||||    
T  2491871 tgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaacaccaatgaccttataatcatcaatgaaa 2491772  T
Q  397 tgatcatatccaaagctt 414  Q
    |||||||| |||||||||    
T  2491771 tgatcatacccaaagctt 2491754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 9594898 - 9595018
Alignment:
Q  294 atgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatg 393  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||| |||| |||| || ||||  |||| || | |||  |||||||  |||||||||    
T  9594898 atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcatttttggaagcaaaatcaatgaccttatacttatcaatg 9594997  T
Q  394 aaatgatcatatccaaagctt 414  Q
    ||||||||||| || ||||||    
T  9594998 aaatgatcatacccgaagctt 9595018  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 9566094 - 9566207
Alignment:
Q  297 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 396  Q
    ||||||| |||||||||||||||||||||||  ||||||||||| ||||| ||| || |||| || |||||||  ||  | |||||  ||||||||||||    
T  9566094 tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaacagaaatgagcttataattatcaatgaaa 9566193  T
Q  397 tgatcatatccaaa 410  Q
    |||||||| |||||    
T  9566194 tgatcatacccaaa 9566207  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 410
Target Start/End: Original strand, 7443269 - 7443373
Alignment:
Q  306 ctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatat 405  Q
    |||||||||| |||||||||||  |||||||| ||||||| ||||||| | ||  ||||||| | ||||||| ||||  ||||||||||||||||||||     
T  7443269 ctctattcttctccaataatcagtccccaaagcattaacaaaaacctcatatttggaagaaatagcaacaactttataattatcaatgaaatgatcatac 7443368  T
Q  406 ccaaa 410  Q
    |||||    
T  7443369 ccaaa 7443373  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 9562235 - 9562342
Alignment:
Q  297 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 396  Q
    ||||||| ||||||||||  |||||||||||  ||||||||||| ||||| ||| || ||||  | |||||||||||  |||||||  ||||||||||||    
T  9562235 tgggatgtcctctattctcttccaataatcagtccccaaagtataaacactaacttcatttttggtagaaacaacaatgaccttataattatcaatgaaa 9562334  T
Q  397 tgatcata 404  Q
    ||||||||    
T  9562335 tgatcata 9562342  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 2474895 - 2474777
Alignment:
Q  297 tgggatgccctctattcttgtccaataatca-tcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaa 395  Q
    ||||||| ||||||||||||||||||||||| |||   ||||||||||||| ||| || ||||  |||||||  ||||   |||| |  |||||||||||    
T  2474895 tgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaacttcatttttggaagaaaatacaatggccttgtaattatcaatgaa 2474796  T
Q  396 atgatcatatccaaagctt 414  Q
    |||||||||||||||||||    
T  2474795 atgatcatatccaaagctt 2474777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 414
Target Start/End: Original strand, 754888 - 754997
Alignment:
Q  305 cctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcata 404  Q
    |||||||||||||||||||||||  |||||| |||| ||||||||| || |||| || |||||||  ||  ||||| |  |||| |||||||||||||||    
T  754888 cctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaacagaaatgaccttgtaattatgaatgaaatgatcata 754987  T
Q  405 tccaaagctt 414  Q
     |||||||||    
T  754988 cccaaagctt 754997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 2632760 - 2632504
Alignment:
Q  17 aacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcat 116  Q
    ||||||||||||||||   | ||| |||||||||||||||||  ||||||||||||||||||| | ||| |||||           |||||| |||||||    
T  2632760 aacaacctcaccttttcattatcttggaaaatactcaaatat--gcagcattcttctaattctcaaaacaagaaa---------aatgaaaacgaggcat 2632672  T
Q  117 ataactatatttcaaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagca 216  Q
    | || |  | || ||||||||||||||||| | |||||||||   | |||||| || | ||||||||||||| ||||  |||||||||||  ||||| |     
T  2632671 agaattgca-ttaaaactcactataagtttcaaaaagctaaa---tatgaattattcacacacatgtgaagtgtatg--actatgataatacaaagaacg 2632578  T
Q  217 agtgttgaaaga----atctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaa 290  Q
    |||| |||||||    | ||||||||||||||||    | || |||||||||| ||||||||||||||||||||||||    
T  2632577 agtggtgaaagaaaagacctgatcttcacaaaac----aatgtgctgattttaaaactgcagggtttggagaattgaa 2632504  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 414
Target Start/End: Original strand, 2644633 - 2644738
Alignment:
Q  309 tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca 408  Q
    |||||||||||||||||||  ||||||||||||||| | ||| || |||||   |||||||| ||  |||||||  ||||||| ||| ||||||||||||    
T  2644633 tattcttgtccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaataatgaccttataattatcaacgaagtgatcatatcca 2644732  T
Q  409 aagctt 414  Q
    ||||||    
T  2644733 aagctt 2644738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 414
Target Start/End: Original strand, 2659420 - 2659525
Alignment:
Q  309 tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca 408  Q
    ||||||| |||||||||||  ||||||||||||||||| || | ||||||   |||||    ||||||||||||  |||||||| |||||||||||||||    
T  2659420 tattcttctccaataatcagtccccaaagtattaacactaatcacttttttgaaagaatgggcaacaaccttataattatcaataaaatgatcatatcca 2659519  T
Q  409 aagctt 414  Q
    ||||||    
T  2659520 aagctt 2659525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 9564836 - 9564909
Alignment:
Q  17 aacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaa 90  Q
    ||||||||||||||||  |||||| |||||||||||||||| |  |||||||||||||||||| ||||| ||||    
T  9564836 aacaacctcaccttttcactgtcttggaaaatactcaaatacatacagcattcttctaattctcagaaccagaa 9564909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 7334560 - 7334657
Alignment:
Q  317 tccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagctt 414  Q
    |||||||||||   |||||||||| ||||| ||| | ||||| |  ||||||| |||| |||||||  ||||||||||||||||||||||| ||||||    
T  7334560 tccaataatcagttcccaaagtataaacactaacttttttttttacagaaacagcaacgaccttataattatcaatgaaatgatcatatccgaagctt 7334657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 2631138 - 2631014
Alignment:
Q  290 aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc 389  Q
    |||||| ||||||| | ||||||||| |||||||||||  ||| ||||||| || | |||| || ||||  ||||||||| |||  |||||||  |||||    
T  2631138 aataatatgggatgtcgtctattcttttccaataatcagtccctaaagtataaagaaaaacttcatttttggaagaaacagcaatgaccttatacttatc 2631039  T
Q  390 aatgaaatgatcatatccaaagctt 414  Q
    |||||||  |||||| |||||||||    
T  2631038 aatgaaacaatcatacccaaagctt 2631014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 2476426 - 2476309
Alignment:
Q  297 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 396  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||||||||| ||| || ||||    |||||||| ||  ||||| |  ||||||||  ||    
T  2476426 tgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacactaacttcgtttttgtcagaaacaagaatgaccttgtagttatcaatagaa 2476327  T
Q  397 tgatcatatccaaagctt 414  Q
    |||||||| |||||||||    
T  2476326 tgatcatacccaaagctt 2476309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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