View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18201_high_5 (Length: 332)
Name: NF18201_high_5
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18201_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 37248630 - 37248710
Alignment:
| Q |
235 |
atattggctccaccaaaatgtgagtaacactaacaagcttggacatatgagaagatgacagcacatgtgtgagagagagag |
315 |
Q |
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| T |
37248630 |
atattggctccaccaaaatgtgagtaacactaacaagcttggacatatgagaagatgacaacacatgtgtgagagagagag |
37248710 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37247999 - 37248235
Alignment:
| Q |
1 |
tgaaaacttgaaatatgttcataaaatgaattctagaaaaagagagttaagatcttatcaatttgtca-tcccacctctaccatttggag---------- |
89 |
Q |
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| T |
37247999 |
tgaaaactttaaatatgttcataaaatgaattctataaaaagagagttaagatcttatccatttgtcatttccatctctatcatttggagagataatctt |
37248098 |
T |
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| Q |
90 |
-----ttggtagagataaagactgacacacaaaaatagatgagatgaattcatcaaaatatacaaaaggaacggtttcnnnnnnngaaatatacaaaagg |
184 |
Q |
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| T |
37248099 |
tatcatttgaagagataaag------atacaaaaatagat-----gaattcatcaaaatatacaaaaggaacggtttctttttttgaaatatacaaaagg |
37248187 |
T |
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| Q |
185 |
aacatattgaatgacatatgacatatttaaagaatatatttaatggtt |
232 |
Q |
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| T |
37248188 |
aacctattgaatgacatataacatataaaaagaatatatttaatggtt |
37248235 |
T |
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