View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18201_high_6 (Length: 282)
Name: NF18201_high_6
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18201_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 41 - 270
Target Start/End: Original strand, 16917647 - 16917879
Alignment:
| Q |
41 |
aagaaccggtgacgattggtataagatagctcatattccta---ttaaaccagattttgtggatccaattaacggtaatttaaagatttttctgtaattt |
137 |
Q |
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| T |
16917647 |
aagaacaggtgaagattggtataagatagctcatgttcctaattttgaatcagattttgtgcatcgaattaacggtaattttaagatttttccgtaattt |
16917746 |
T |
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| Q |
138 |
agtaaataacttaccttttctcctaaagccagtattctcataaaattcttgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcga |
237 |
Q |
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| T |
16917747 |
agtaaataagttacgttttttactaaagccagtattctcataaaattcctgatgttttctaacacattgaattgttatgtgcagaagaagagtatagcga |
16917846 |
T |
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| Q |
238 |
ttcagacagtgaatcggacatggaggttgatga |
270 |
Q |
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| T |
16917847 |
ttcagacagtgaattggacatggaggttgatga |
16917879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 88 - 270
Target Start/End: Original strand, 16912523 - 16912705
Alignment:
| Q |
88 |
cagattttgtggatccaattaacggtaatttaaagatttttctgtaatttagtaaataacttaccttttctcctaaagccagtattctcataaaattctt |
187 |
Q |
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| T |
16912523 |
cagatgttgtgcatccaattaacggtaatttaaagattttgctataatttagtaaataagttacgttttttactaaagccagtattctcataaaattctt |
16912622 |
T |
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| Q |
188 |
gatgttttctaacacattgaattgttatgtgcagaagaagagtatagcgattcagacagtgaatcggacatggaggttgatga |
270 |
Q |
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| T |
16912623 |
gatgttttctaacacattgaattgttatgtgcagaagaagagtatagcaattcagacaatgaattggacatggaggttgatga |
16912705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 16912461 - 16912502
Alignment:
| Q |
41 |
aagaaccggtgacgattggtataagatagctcatattcctat |
82 |
Q |
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| T |
16912461 |
aagaacaggtgaagattggtataagatagctcatgttcctat |
16912502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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