View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18201_low_11 (Length: 208)
Name: NF18201_low_11
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18201_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 10874285 - 10874467
Alignment:
| Q |
10 |
aagcaaaggggacaagtggggttggtggtagacagtgaatgggcagagcctaactctgataagaatgaagataaatctgctgctgcaagacatctagatt |
109 |
Q |
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| T |
10874285 |
aagcaagggggacaagtggggttggtggtagacagtgaatgggcagagcctaactctgataagattgaagataaatctgctgctgcaagacatctagatt |
10874384 |
T |
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| Q |
110 |
ttcatcttggctggtagattcctatacatttgttctatattattagttttcgtaagagtttcagagatttttcactttatata |
192 |
Q |
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| T |
10874385 |
ttcatcttggctggtagattcctatacatttgttctatattattagttttcgtaagagtttcagagatttttcactttatata |
10874467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 10861566 - 10861699
Alignment:
| Q |
10 |
aagcaaaggggacaagtggggttggtggtagacagtgaatgggcagagcctaactctgataagaatgaagataaatctgctgctgcaagacatctagatt |
109 |
Q |
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|||||| | |||||||||||| |||| |||||| |||||||| ||||||||||||||||||||| |||||||||||| |||||||| |||| |||||| |
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| T |
10861566 |
aagcaaggaggacaagtggggctggttgtagactgtgaatggtcagagcctaactctgataagattgaagataaatccgctgctgctagacgcttagatt |
10861665 |
T |
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| Q |
110 |
ttcatcttggctggtagattcctatacatttgtt |
143 |
Q |
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| T |
10861666 |
ttcagattggctggtactttcctatacatttgtt |
10861699 |
T |
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