View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18201_low_3 (Length: 464)
Name: NF18201_low_3
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18201_low_3 |
 | |
|
| [»] scaffold0150 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0150 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 17278 - 17695
Alignment:
| Q |
13 |
aatatggtgagaaaagtaatagtcttatgttttaccgtttaaggctcctttcatctataaaatgttgaacatccattttttatttagaggagtgcacgct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17278 |
aatatggtgagaaaagtaatagtcttatgttttaccgtttaaggctcctttcatctataaaatgttgaacatccattttttatttagaggagtgcacgct |
17377 |
T |
|
| Q |
113 |
ctttcctgcgctttctctaacatacaccctcttgttaaatgaaattcatgtgagtaccacactttagagatggattctacataaagtgatgatcacatca |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17378 |
ctttcctgcgctttctctaacatacactctcttgttagatgaaatacatgtgagtaccacactttagaaatggattctacataaagtgatgatcacatca |
17477 |
T |
|
| Q |
213 |
ctcaatatgaagtgagtgctaaggtgttaaaaagatattatttctaacatttctctttatatgaaacttctttataacacttgatataaattttgatttt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17478 |
ctcaatatgaagtgagtgctaaggtgttaaaaagatattgtttctaaaatttctctttatatgaaacttctttataacacttgatataaattttgatttt |
17577 |
T |
|
| Q |
313 |
tactcgtaataaaaggaatgagatctctcgtgcctttttcaaatg--nnnnnnngtcatgccttgaatataaactactctcaaatcccaatcaaccaatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17578 |
tactcgtaataaaaggaatgagatctctcgtgcctttctcaaatgtttttttttgtcatgccttgaatatgaactactctcaaatcccaatcaaccaatt |
17677 |
T |
|
| Q |
411 |
tttgttgttgactgccta |
428 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17678 |
tttgttgttgactgccta |
17695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 17548216 - 17547800
Alignment:
| Q |
13 |
aatatggtgagaaaagtaatagtcttatgttttaccgtttaaggctcctttcatctataaaatgttgaacatcca-ttttttatttagaggagtgcacgc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
17548216 |
aatatggtgagaaaagtaatagtcttatgttttaccgtttaaggctcctttcatctataaagtgttgaacatccacttttttatttagagcagtgcacgc |
17548117 |
T |
|
| Q |
112 |
tctttcctgcgctttctctaacatacaccctcttgttaaatgaaattcatgtgagtaccacactttagagatggattctacataaagtgatgatcacatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17548116 |
tctttcctgcgctttctctaacatacactctcttgttagatgaaatccatatgagtaccacactttataaatggattctacataaagtgatgatcacatc |
17548017 |
T |
|
| Q |
212 |
actcaatatgaagtgagtgctaaggtgttaaaaagatattatttctaacatttctctttatatgaaacttctttataacacttgatataaattttgattt |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17548016 |
actcaatatgaagtgagtgttaaggtgttaaaaagatattgtttctaacatttctctttatatgaaacttctttataacacttgatataaattttgattt |
17547917 |
T |
|
| Q |
312 |
ttactcgtaataaaaggaatgagatctctcgtgcctttttcaaatgnnnnnnngtcatgccttgaatataaactactctcaaatcccaatcaaccaattt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
17547916 |
ttactcgtaataaaaggaatgagatctctcgtgcctttctcaaatgtttttttgtcatgccttgaatatgaactactcccaaatcccaatcaaccaattt |
17547817 |
T |
|
| Q |
412 |
ttgttgttgactgccta |
428 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17547816 |
ttgttgttgactgccta |
17547800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 17017779 - 17017363
Alignment:
| Q |
13 |
aatatggtgagaaaagtaatagtcttatgttttaccgtttaaggctcctttcatctataaaatgttgaacatcca-ttttttatttagaggagtgcacgc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
17017779 |
aatatggtgagaaaagtaatagtcttatgttttaccgtttaaggctcctttcatctataaagtgttgaacatccacttttttatttagagcagtgcacgc |
17017680 |
T |
|
| Q |
112 |
tctttcctgcgctttctctaacatacaccctcttgttaaatgaaattcatgtgagtaccacactttagagatggattctacataaagtgatgatcacatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17017679 |
tctttcctgcgctttctctaacatacactctcttgttagatgaaatccatatgagtaccacactttataaatggattctacataaagtgatgatcacatc |
17017580 |
T |
|
| Q |
212 |
actcaatatgaagtgagtgctaaggtgttaaaaagatattatttctaacatttctctttatatgaaacttctttataacacttgatataaattttgattt |
311 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17017579 |
actcaatatgaagtgagtgttaaggtattaaaaagatagtgtttctaacatttctctttatatgaaacttctttataacacttgatataaattttgattt |
17017480 |
T |
|
| Q |
312 |
ttactcgtaataaaaggaatgagatctctcgtgcctttttcaaatgnnnnnnngtcatgccttgaatataaactactctcaaatcccaatcaaccaattt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
17017479 |
ttactcgtaataaaaggaatgagatctctcgtgcctttctcaaatgtttttttgtcatgccttgaatatgaactactcccaaatcccaatcaaccaattt |
17017380 |
T |
|
| Q |
412 |
ttgttgttgactgccta |
428 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17017379 |
ttgttgttgactgccta |
17017363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 7447715 - 7447642
Alignment:
| Q |
126 |
tctctaacatacaccctcttgttaaatgaaattcatgtgagtaccacactttagagatggattctacataaagtg |
200 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||| ||||||||| ||||| |||||| | |||||||||| |
|
|
| T |
7447715 |
tctctaacat-cactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtg |
7447642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 46893496 - 46893422
Alignment:
| Q |
126 |
tctctaacatacaccctcttgttaaatgaaattcatgtgagtaccacactttagagatggattctacataaagtg |
200 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||||| ||| ||||| || || |||||| | |||||||||| |
|
|
| T |
46893496 |
tctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtg |
46893422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 864224 - 864172
Alignment:
| Q |
152 |
tgaaattcatgtgagtaccacactttagagatggattctacataaagtgatga |
204 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||| | |||||||| ||||| |
|
|
| T |
864224 |
tgaaattcatgtgggtaccacacattagaaatggatcccacataaagcgatga |
864172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 42635364 - 42635416
Alignment:
| Q |
152 |
tgaaattcatgtgagtaccacactttagagatggattctacataaagtgatga |
204 |
Q |
| |
|
||||||||||||| ||||||||| || | |||||||| |||||||||||||| |
|
|
| T |
42635364 |
tgaaattcatgtgggtaccacacattgaaaatggattccacataaagtgatga |
42635416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 17642408 - 17642460
Alignment:
| Q |
152 |
tgaaattcatgtgagtaccacactttagagatggattctacataaagtgatga |
204 |
Q |
| |
|
|||||| |||||| ||||||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
17642408 |
tgaaatacatgtgggtaccacacattagaaatggatcatacataaagtgatga |
17642460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University