View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18201_low_5 (Length: 402)
Name: NF18201_low_5
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18201_low_5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 27443686 - 27443304
Alignment:
| Q |
1 |
gaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaagatccaccgcaattgttgctccaggtcctaactca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||| | ||| || |||||| ||| ||||| |
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|
| T |
27443686 |
gaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcg |
27443587 |
T |
|
| Q |
101 |
aaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaa |
200 |
Q |
| |
|
||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
27443586 |
aaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaa |
27443487 |
T |
|
| Q |
201 |
caactgcataaagaaatacaaaatcactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27443486 |
caactgcataaagaaatacaaaatcactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatc |
27443387 |
T |
|
| Q |
301 |
atatggaaattaattaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacga |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27443386 |
atatggaaattaattaatgtagttgagtagtgatatatataccatagaagaggaatgcaaaactaaggcatagagcaacacga |
27443304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 27207844 - 27208225
Alignment:
| Q |
1 |
gaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaagatccaccgcaattgttgctccaggtcctaactca |
100 |
Q |
| |
|
|||| |||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27207844 |
gaaccttccgttgttgtcggagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactca |
27207943 |
T |
|
| Q |
101 |
aaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207944 |
aaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaa |
27208043 |
T |
|
| Q |
201 |
caactgcataaagaaatacaaaat-cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaatt----gat |
295 |
Q |
| |
|
| ||||||| | |||| ||||| | ||||||||||| ||||||||||||||| | || ||||| |||| ||| ||||||||||||| ||| |
|
|
| T |
27208044 |
ccactgcat--acaaatgaaaaatacgttcatattagaagagcaaatgaatttattaaccacatgaagagaaataaactaagctaaatgaattaatggat |
27208141 |
T |
|
| Q |
296 |
taatcatatggaaattaattaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
382 |
Q |
| |
|
||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
27208142 |
taactatatggaa---aattaatgtagttgagtactgatatatataccatagaagaggaatgcaaagctaaagcataaagcaacacg |
27208225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 27432924 - 27433308
Alignment:
| Q |
1 |
gaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaagatccaccgcaattgttgctccaggtcctaactca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
27432924 |
gaactttccattgttgttggagcatccggttcgtccccaaaatcgacccgaccatggtgatggaaggtccacctcaattgttgctccaggtcctaactca |
27433023 |
T |
|
| Q |
101 |
aaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaa |
200 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27433024 |
aaacccgttgttgatagctgaggcttttggtctccagttaacgttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaa |
27433123 |
T |
|
| Q |
201 |
caactgcataaagaaatacaaaat-cactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatg----aattgat |
295 |
Q |
| |
|
| |||||| | |||| |||||| | ||||||||||| ||||||||||||||| | || ||||| ||| | | ||||||||| |||| || |
|
|
| T |
27433124 |
ccgctgcat--acaaatgcaaaatacgttcatattagaagagcaaatgaatttattaaccacatgaagaggaataaaataagctaaatgaattaatttat |
27433221 |
T |
|
| Q |
296 |
taatcatatggaaattaattaatgtagt----tgagtagtgatatata-taccatagaaaaggaatgcaaaactaaggcatagagcaaca |
380 |
Q |
| |
|
||| |||||||| |||||||||||| |||||| ||||||||| |||||||||| |||||||| || |||| ||||| ||||||| |
|
|
| T |
27433222 |
taactatatggaa---aattaatgtagttgaatgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaaca |
27433308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 27221177 - 27221533
Alignment:
| Q |
1 |
gaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaagatccaccgcaattgttgctccaggtcctaactca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| || |||||| ||| ||||| |
|
|
| T |
27221177 |
gaactttccattgttgttgaagcatccggttcggccccaaaatctacccgaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcg |
27221276 |
T |
|
| Q |
101 |
aaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaa |
200 |
Q |
| |
|
||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27221277 |
aaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaa |
27221376 |
T |
|
| Q |
201 |
caactgcataaagaaatacaaaatcactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatc |
300 |
Q |
| |
|
| ||||||| ||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
27221377 |
ccactgcat------atacaaa-----------------tacaaatgaatttaataagcgcatgaagagaaattaacttagctaagtgaattgattaatt |
27221453 |
T |
|
| Q |
301 |
atatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaaaggaatgcaaaactaaggcatagagcaac |
379 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27221454 |
atatggaa---aattaatgtagttatgtattgatatatgtacgtaccatagaagaggaatgcaaaactaaggcatagagcaac |
27221533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 27215215 - 27215574
Alignment:
| Q |
1 |
gaactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaagatccaccgcaattgttgctccaggtcctaactca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||| | ||| || |||||| ||| ||||| |
|
|
| T |
27215215 |
gaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatcccaactcg |
27215314 |
T |
|
| Q |
101 |
aaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaa |
200 |
Q |
| |
|
||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27215315 |
aaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaa |
27215414 |
T |
|
| Q |
201 |
caactgcataaagaaatacaaaatcactcatattagaattataaatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatc |
300 |
Q |
| |
|
| ||||||| ||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
27215415 |
ccactgcat------atacaaa-----------------tacaaatgaatttagtaagcgcatgaagagaaattaacttagctaagtgaattgattaatt |
27215491 |
T |
|
| Q |
301 |
atatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
382 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||| |||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
27215492 |
atatggaa---aattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaactaaggcacagagcaacacg |
27215574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 27389139 - 27389347
Alignment:
| Q |
2 |
aactttccattgttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaagatccaccgcaattgttgctccaggtcctaactcaa |
101 |
Q |
| |
|
|||| ||| |||||| | ||||||||||||||| ||||||||| ||| |||||||| || |||| ||| | | | |||||||||||||||||||| | |
|
|
| T |
27389139 |
aactgtccgttgttggttgagcatccggttcgggcccaaaatcgacctgaccatggggaaggaatttccgctgagttcgttgctccaggtcctaactcga |
27389238 |
T |
|
| Q |
102 |
aacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaac |
201 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||| |||||||| ||| | ||||||| | | |
|
|
| T |
27389239 |
aacctgttgttgatagctgaggtttttggtctccggttaaggttcctggccatacggtgtatccacatctattcgtgaatgttaccgtggctcctctagc |
27389338 |
T |
|
| Q |
202 |
aactgcata |
210 |
Q |
| |
|
| ||||||| |
|
|
| T |
27389339 |
agctgcata |
27389347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 27455087 - 27455277
Alignment:
| Q |
14 |
ttgttggagcatccggttcggccccaaaatctacccgaccatggtgatggaagatccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcg |
113 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||| || |||||||||||||| ||||| | ||| || ||| || ||| || || |||| || || |
|
|
| T |
27455087 |
ttgttggagcatccgattcggcctcaaaatcaacctgatcatggtgatggaaggtccactgaaatagta-ctctagatcccaagtcgaaacttgtcgttc |
27455185 |
T |
|
| Q |
114 |
atagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactg |
206 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| || | |||||| | ||||||||| |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27455186 |
atagctgaggtttttg-tctctagttaacgtttctagtcatacaatttattcacacttattggtgaatgtcaccttagctcctccaactactg |
27455277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 27410183 - 27410303
Alignment:
| Q |
90 |
gtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcacctt |
189 |
Q |
| |
|
|||| ||||||||||| ||||| |||| ||||| |||| || ||| || ||||||||||||||||| ||| |||| ||||| |||||||||||||| |
|
|
| T |
27410183 |
gtcccaactcaaaacctgttgttgataattgaggggtttgagctgtagtaaaggttcctggccatacagtatatccacatctattcgtgaatgtcacctt |
27410282 |
T |
|
| Q |
190 |
agctcctccaacaactgcata |
210 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
27410283 |
ggctcctccaaccactgcata |
27410303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 27415821 - 27415763
Alignment:
| Q |
143 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaac |
201 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
27415821 |
gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaac |
27415763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
| Q |
337 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
382 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
27390259 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
| Q |
337 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
382 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
27410494 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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