View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18201_low_9 (Length: 281)
Name: NF18201_low_9
Description: NF18201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18201_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 8004706 - 8004441
Alignment:
| Q |
1 |
attcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004706 |
attcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagt |
8004607 |
T |
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| Q |
101 |
aattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004606 |
gattagattagacatatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaat |
8004507 |
T |
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| Q |
201 |
taatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
8004506 |
taatgaaaccattgaaaaacaatgacacttacagataagaaaaggttcatcccggtaagcaatgat |
8004441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 51518999 - 51518878
Alignment:
| Q |
1 |
attcttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51518999 |
attcttttgctctctgtcctttgttgattcaagtttgttgatccttgggcggaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagt |
51518900 |
T |
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| Q |
101 |
aattagattagacatatcatac |
122 |
Q |
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| T |
51518899 |
gattagattagacatatcatac |
51518878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 7900522 - 7900664
Alignment:
| Q |
127 |
aagtaccaccagagagaaca---taattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaat |
223 |
Q |
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|||||||||||||||||||| |||||||| ||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7900522 |
aagtaccaccagagagaacaacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaat |
7900621 |
T |
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| Q |
224 |
gacacttacagataagaaaagattcatcccagtaagcaatgat |
266 |
Q |
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| T |
7900622 |
gacacttacagataagaaaaggttcatcccagtaagcagtgat |
7900664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 51518882 - 51518761
Alignment:
| Q |
145 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
244 |
Q |
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|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
|
| Q |
245 |
attcatcccagtaagcaatgat |
266 |
Q |
| |
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|||||||| || ||||||||| |
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| T |
51518782 |
gttcatcccggtcagcaatgat |
51518761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 1300156 - 1300411
Alignment:
| Q |
4 |
cttttgttctctgtcctttgttgattcaagtttgttgatccttgggcgaaaattagttgggtctcttctaaatgtgatatcaagatgctgcaacagtaat |
103 |
Q |
| |
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|||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | || |
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| T |
1300156 |
cttttgctctctatccttggttgaatcaagtttgttgatccttgggcggaaattagttggatctcttctaaatgtgatatcaagatgctgcaacgattat |
1300255 |
T |
|
| Q |
104 |
tagattagacatatcatacgaacaagtaccaccagag-agaacataattttttaattttaacgtgtgtgatac--cctgaatttttaaaaaggaacgaat |
200 |
Q |
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|| ||||||||| | ||| | |||||||||| |||| | |||||||||||| ||||||||| || |||||| | |||||||||| |
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| T |
1300256 |
tacattagacatttattacaagcaagtaccacgagagcaaaacataatttttaaattttaacatgcatgatacttcaattatttttaaaa---------- |
1300345 |
T |
|
| Q |
201 |
taatgaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgat |
266 |
Q |
| |
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||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |
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| T |
1300346 |
taacgaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagtcagcagtgat |
1300411 |
T |
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