View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18203_low_1 (Length: 322)
Name: NF18203_low_1
Description: NF18203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18203_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 10887605 - 10887901
Alignment:
| Q |
11 |
caaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtaga |
110 |
Q |
| |
|
||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
10887605 |
caaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaacctttcatcggtaaa |
10887704 |
T |
|
| Q |
111 |
ccttcaagtgaccttccggtaactctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaa |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
10887705 |
ccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagcttcgactcaagggagtaagaaggaa |
10887804 |
T |
|
| Q |
211 |
ttgatcccgataccaccgcaccgacaacctcttcgtcttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctt |
307 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
10887805 |
ttgatcccgataccactgcaccgacaacctcttcgtcttccatggacataactttttggtcagatatcttcggtggtgttaacataggtagcttctt |
10887901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 10866760 - 10866464
Alignment:
| Q |
11 |
caaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtaga |
110 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
10866760 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaattgtagtcaaaaccttccatcggtaaa |
10866661 |
T |
|
| Q |
111 |
ccttcaagtgaccttccggtaactctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| |||| |
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|
| T |
10866660 |
ccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10866561 |
T |
|
| Q |
211 |
ttgatcccgataccaccgcaccgacaacctcttcgtcttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctt |
307 |
Q |
| |
|
||||||| || ||||| |||| ||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |
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|
| T |
10866560 |
ttgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttctt |
10866464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 10873545 - 10873841
Alignment:
| Q |
11 |
caaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtaga |
110 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
10873545 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaa |
10873644 |
T |
|
| Q |
111 |
ccttcaagtgaccttccggtaactctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| |||| |
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|
| T |
10873645 |
ccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10873744 |
T |
|
| Q |
211 |
ttgatcccgataccaccgcaccgacaacctcttcgtcttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctt |
307 |
Q |
| |
|
||||||| || ||||| |||| ||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |
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|
| T |
10873745 |
ttgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttctt |
10873841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 10878616 - 10878912
Alignment:
| Q |
11 |
caaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtaga |
110 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
10878616 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaa |
10878715 |
T |
|
| Q |
111 |
ccttcaagtgaccttccggtaactctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| |||| |
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|
| T |
10878716 |
ccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10878815 |
T |
|
| Q |
211 |
ttgatcccgataccaccgcaccgacaacctcttcgtcttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctt |
307 |
Q |
| |
|
||||||| || ||||| |||| ||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
10878816 |
ttgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttctt |
10878912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 10883687 - 10883983
Alignment:
| Q |
11 |
caaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtaga |
110 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
10883687 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaa |
10883786 |
T |
|
| Q |
111 |
ccttcaagtgaccttccggtaactctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| |||| |
|
|
| T |
10883787 |
ccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10883886 |
T |
|
| Q |
211 |
ttgatcccgataccaccgcaccgacaacctcttcgtcttccatggacataactttctggtcagatattttcggtggtggtaacataggtagcttctt |
307 |
Q |
| |
|
||||||| || ||||| |||| ||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
10883887 |
ttgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttggtcggagattttgggtggaggtaacgtaggtagcttctt |
10883983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 39676324 - 39676070
Alignment:
| Q |
11 |
caaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtaga |
110 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| |||| | |
|
|
| T |
39676324 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
39676225 |
T |
|
| Q |
111 |
ccttcaagtgaccttccggtaactctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaa |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||| || ||||| ||||||||||| ||||| || ||||| |||||||| |||| |
|
|
| T |
39676224 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
39676125 |
T |
|
| Q |
211 |
ttgatcccgataccaccgcaccgacaacctcttcgtcttccatggacataacttt |
265 |
Q |
| |
|
||||||| || ||||| ||||| |||||||| || ||||||||||||| |||||| |
|
|
| T |
39676124 |
ttgatccagacaccactgcaccaacaacctcctcatcttccatggacaaaacttt |
39676070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 10046380 - 10046135
Alignment:
| Q |
11 |
caaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtaga |
110 |
Q |
| |
|
|||||| |||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |||| | |
|
|
| T |
10046380 |
caaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttccattggtaaa |
10046281 |
T |
|
| Q |
111 |
ccttcaagtgaccttccggtaactctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagctttgactcaagggagtaagacggaa |
210 |
Q |
| |
|
|| |||||| ||||||||||||||||||| |||||||| | ||| || ||||| |||||||||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
10046280 |
cccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgagtatgacggaa |
10046181 |
T |
|
| Q |
211 |
ttgatcccgataccaccgcaccgacaacctcttcgtcttccatgga |
256 |
Q |
| |
|
||| || | ||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
10046180 |
ttgtaccggttaccaccgcacggacaacctcgtcatcttccatgga |
10046135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 30709588 - 30709688
Alignment:
| Q |
15 |
ggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagacctt |
114 |
Q |
| |
|
||||| |||||||| || || || || |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
30709588 |
ggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaacggtaaacctt |
30709687 |
T |
|
| Q |
115 |
c |
115 |
Q |
| |
|
| |
|
|
| T |
30709688 |
c |
30709688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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