View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18203_low_3 (Length: 284)
Name: NF18203_low_3
Description: NF18203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18203_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 53791558 - 53791835
Alignment:
| Q |
1 |
ttttccaagaaataatgtttgtgtcttccaaaaaagt-agttcaataacgcaaaggcaggctaaata-----caaggaagaaaagctacttagttttgta |
94 |
Q |
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| T |
53791558 |
ttttccaagaaataatgtttgtgtcttccaaaaaagttagttcaataacgcaaagccaggctaaatacaatacaaggaagaaaagctacttagttttgta |
53791657 |
T |
|
| Q |
95 |
tatagtatagagtagatataatgttagttttgtatgcatacgaaacgaacaaatgagttatttgactttatttatttaactccaatgttgtacacgttgc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53791658 |
tatagtatagagtagatataatgttagttttgtatgcatacaaaacgaacaaatgagttatttgactttatttatttaactccaatgttgtacacgttgc |
53791757 |
T |
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| Q |
195 |
acatgtttgtctcacgggtgc-ttagtttttcagtagtaagctgaactgtgaaaccaaaccaatcatcaaccatgtctctg |
274 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53791758 |
acatgtttgtctcacgggtgctttagtttttc---agtaagctgaactgtgaaaccaaaccaatcatcaaccatgtctctg |
53791835 |
T |
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