View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18203_low_4 (Length: 270)

Name: NF18203_low_4
Description: NF18203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18203_low_4
NF18203_low_4
[»] chr3 (5 HSPs)
chr3 (1-224)||(31274307-31274530)
chr3 (133-210)||(41767763-41767840)
chr3 (132-206)||(17439964-17440038)
chr3 (144-206)||(28206536-28206598)
chr3 (133-198)||(25750349-25750414)
[»] chr7 (2 HSPs)
chr7 (135-222)||(37449493-37449580)
chr7 (132-224)||(29658253-29658345)
[»] chr4 (9 HSPs)
chr4 (132-206)||(49280668-49280742)
chr4 (131-206)||(12820404-12820479)
chr4 (132-222)||(35451104-35451194)
chr4 (145-206)||(53685121-53685182)
chr4 (135-206)||(40082222-40082293)
chr4 (132-215)||(44975930-44976013)
chr4 (132-222)||(6365346-6365436)
chr4 (132-206)||(32885710-32885784)
chr4 (133-221)||(31601829-31601917)
[»] chr1 (2 HSPs)
chr1 (132-222)||(9527448-9527538)
chr1 (132-206)||(11405478-11405552)
[»] chr8 (6 HSPs)
chr8 (132-224)||(33570410-33570502)
chr8 (132-221)||(6064399-6064488)
chr8 (145-206)||(10557468-10557529)
chr8 (132-221)||(13762496-13762585)
chr8 (133-222)||(14683900-14683988)
chr8 (134-206)||(13702351-13702423)
[»] chr5 (3 HSPs)
chr5 (132-224)||(14487583-14487675)
chr5 (132-206)||(9408949-9409023)
chr5 (132-198)||(37303956-37304022)
[»] chr6 (1 HSPs)
chr6 (144-222)||(16251506-16251584)
[»] chr2 (1 HSPs)
chr2 (132-206)||(11133098-11133172)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31274530 - 31274307
Alignment:
Q  1 ttaaatagctttgatatcttttgagaaataaagatgatttcaactcctctaaagcacacaatttgaagagctgggttacaaagacttgctaattaattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31274530 ttaaatagctttgatatcttttgagaaataaagatgatttcaactcctctaaagcacacaatttgaagagctgggttacaaagacttgctaattaattaa 31274431  T
Q  101 acaaattttgtccccgtgagcataactcaaagacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| ||  ||||||||||||||||    
T  31274430 acaaattttgtccccgtgagcataactcaaagacaatgtattgttatatgcaggggtcgaggtttgaaccttgtacatcccatttattcaccttaaaaga 31274331  T
Q  201 tgaattatagtcattagactactt 224  Q
    ||||||||||||||||||||||||    
T  31274330 tgaattatagtcattagactactt 31274307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 41767840 - 41767763
Alignment:
Q  133 acaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatag 210  Q
    |||||| ||||||||||||||||||| ||||| ||| || || || | ||| ||||||||||| ||| ||||||||||    
T  41767840 acaatgcattgttatatgcaggggtcattgttcgaatctcgggcaccccacttattcaccttataaggtgaattatag 41767763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 17440038 - 17439964
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||||| ||| ||||||||||||| || ||||||||||| ||| | | ||| ||||||||||| ||| ||||||    
T  17440038 gacaatgcattattatatgcaggggccggtgtttgaacctcggataccccacttattcaccttataaggtgaatt 17439964  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 28206598 - 28206536
Alignment:
Q  144 ttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||||||| ||||||  ||||||||| |||||||| ||| ||||||||||| ||| ||||||    
T  28206598 ttatatgcacgggtcgaggtttgaaccctggacatcccacttattcaccttataaggtgaatt 28206536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 25750414 - 25750349
Alignment:
Q  133 acaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaa 198  Q
    |||||| |||||||||||||  |||||  ||||||||| |||||| | |||||||||| |||||||    
T  25750414 acaatgcattgttatatgcaatggtcggagtttgaaccgtggacaccccacctattcatcttaaaa 25750349  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 37449580 - 37449493
Alignment:
Q  135 aatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactac 222  Q
    |||| ||| ||||||||||||||||  |||||||||||||||||| ||| ||||||| ||||||  |||||||||| || ||||||||    
T  37449580 aatgcattattatatgcaggggtcggagtttgaaccttggacatcccacttattcactttaaaaagtgaattatagccactagactac 37449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 29658345 - 29658253
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactactt 224  Q
    ||||||| ||||||||||||||||| ||  ||| |||||  ||||| | ||| ||||||||||| ||| |||||| ||| || ||| ||||||    
T  29658345 gacaatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagccactaggctactt 29658253  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 49280742 - 49280668
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||||| ||| |||||||||||||||| |||||||||| |||||| ||||| ||||||||||| ||| ||||||    
T  49280742 gacaatgaattattatatgcaggggtcggtgtttgaaccctggacacctcacttattcaccttataaggtgaatt 49280668  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 12820479 - 12820404
Alignment:
Q  131 agacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    |||||||| ||||||||||||||||||||  ||| ||||| |||||| | ||| ||||||||||| ||| ||||||    
T  12820479 agacaatgcattgttatatgcaggggtcggggttagaaccctggacaccccacttattcaccttataaggtgaatt 12820404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 35451194 - 35451104
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactac 222  Q
    ||||||| ||| ||||||||||||||||  ||| ||||   ||||| ||||| ||||||||||| |||||||||| ||| || ||||||||    
T  35451194 gacaatgcattattatatgcaggggtcggagttcgaactacggacacctcacttattcaccttataagatgaattctagccactagactac 35451104  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 53685121 - 53685182
Alignment:
Q  145 tatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    |||||||||||||||  ||| |||||| | |||| |||| ||||||||||||||||||||||    
T  53685121 tatatgcaggggtcgaagttcgaacctcgaacatttcacttattcaccttaaaagatgaatt 53685182  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 40082293 - 40082222
Alignment:
Q  135 aatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    |||||||| |||||||||||||| ||  || ||||| ||||||| |||| ||||||||||| ||| ||||||    
T  40082293 aatgtattattatatgcaggggttgtgattcgaaccctggacatttcacatattcaccttataaggtgaatt 40082222  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 44975930 - 44976013
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcatt 215  Q
    ||||||||||| || ||||||||||| |  ||| ||| || ||||||| ||| ||||||||||| |||||||||| ||| ||||    
T  44975930 gacaatgtattattgtatgcaggggttggggttcgaatctcggacatcccacttattcaccttataagatgaattctagccatt 44976013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 6365346 - 6365436
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactac 222  Q
    ||||||| ||| ||||||||||||||||  |||  |||| |||||||||||  ||||||||||| ||| | |||| ||| |||||| ||||    
T  6365346 gacaatgcattattatatgcaggggtcgaagttataaccctggacatctcatttattcaccttataaggtaaattctagccattaggctac 6365436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 32885710 - 32885784
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||||| ||| ||||||||||||||||  ||| |||||| ||||| | ||| ||||||||||| ||| ||||||    
T  32885710 gacaatgcattattatatgcaggggtcggagttcgaacctcggacaccccacttattcaccttataaggtgaatt 32885784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 31601829 - 31601917
Alignment:
Q  133 acaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagacta 221  Q
    |||||||||| ||||||||||||| ||   || |||||  ||||| | ||| ||||||||||| |||||||||| ||| |||| |||||    
T  31601829 acaatgtattattatatgcaggggccgagattcgaaccccggacaccccacttattcaccttataagatgaattctagccatttgacta 31601917  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 9527448 - 9527538
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactac 222  Q
    ||||||| ||||||||||||||||||||  ||||||||| |||||| | ||| |||||| |||| ||| |||||| ||| || ||||||||    
T  9527448 gacaatgcattgttatatgcaggggtcggggtttgaaccctggacaccccacttattcatcttataaggtgaattctagccactagactac 9527538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 11405478 - 11405552
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||||| ||||||||||||||||||||  ||| |||||  ||||| | ||| ||||||||||| ||| ||||||    
T  11405478 gacaatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttataaggtgaatt 11405552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 33570502 - 33570410
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactactt 224  Q
    ||||||| ||||||||||||| ||||||  ||| |||||| ||||| | ||| ||||||||||| ||| |||||| ||| || || |||||||    
T  33570502 gacaatgcattgttatatgcatgggtcggggttcgaacctcggacaccccacttattcaccttataaggtgaattctagccactaaactactt 33570410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 6064399 - 6064488
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagacta 221  Q
    ||||||| ||| ||||||||||||||||  ||| |||||| |||||  |||| |||||| |||| ||| |||||| ||| || |||||||    
T  6064399 gacaatgcattattatatgcaggggtcggggttcgaacctcggacacttcacttattcagcttataaggtgaattctagccactagacta 6064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 10557529 - 10557468
Alignment:
Q  145 tatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    |||||||||||| ||| |||||||||| ||||| | ||| ||| ||||||||||| ||||||    
T  10557529 tatatgcaggggccgtggtttgaacctcggacaccccacttatccaccttaaaagttgaatt 10557468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 13762585 - 13762496
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagacta 221  Q
    ||||||| ||| |||||||||||||||  |||| |||||  ||||| | ||| ||||||||||| ||| | |||| || |||||||||||    
T  13762585 gacaatgcattattatatgcaggggtcagtgttcgaaccacggacaccccacttattcaccttacaaggtaaattctaatcattagacta 13762496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 14683900 - 14683988
Alignment:
Q  133 acaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactac 222  Q
    |||||| ||| |||||||||||| |||  ||| |||||  ||||||| ||| ||||||||||| ||| |||||| |||||| ||||||||    
T  14683900 acaatgcattattatatgcaggg-tcggggttcgaaccccggacatcccacttattcaccttataaggtgaattctagtcactagactac 14683988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 13702423 - 13702351
Alignment:
Q  134 caatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||| ||| ||||||||||||||||  ||| ||||||  |||| ||||| ||||||||||| ||| ||||||    
T  13702423 caatgcattattatatgcaggggtcggggttcgaacctcagacacctcacttattcaccttataaggtgaatt 13702351  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 14487583 - 14487675
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactactt 224  Q
    ||||||| ||| ||||||| |||||| |  ||| |||||| ||| ||| ||| ||||||||||| ||| |||||| ||| |||||||||||||    
T  14487583 gacaatgcattattatatgtaggggttggggttcgaacctcggatatcccacttattcaccttataaggtgaattctagccattagactactt 14487675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 9409023 - 9408949
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||||| ||||||||||||||||||||  ||| |||||  ||||| ||||  |||||| |||| ||||||||||    
T  9409023 gacaatgcattgttatatgcaggggtcggagttcgaaccccggacacctcatttattcaacttataagatgaatt 9408949  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 37303956 - 37304022
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaa 198  Q
    ||||||||||| ||||||||||||||||  ||| ||||| |||||| | ||| ||||||| ||||||    
T  37303956 gacaatgtattattatatgcaggggtcggggttcgaaccctggacaccccacttattcactttaaaa 37304022  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 16251584 - 16251506
Alignment:
Q  144 ttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaattatagtcattagactac 222  Q
    ||||||||||||||||||||| ||||   ||||| | ||| ||||||||||| ||| |||||| |||||| ||| ||||    
T  16251584 ttatatgcaggggtcgttgttcgaactccggacaccccacttattcaccttataaggtgaattctagtcactaggctac 16251506  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 11133098 - 11133172
Alignment:
Q  132 gacaatgtattgttatatgcaggggtcgttgtttgaaccttggacatctcacctattcaccttaaaagatgaatt 206  Q
    ||||||| ||||||||||||||||||||  ||| |||||  ||||| | ||| ||||||||||| ||| ||||||    
T  11133098 gacaatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttataaggtgaatt 11133172  T

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