View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18204_low_1 (Length: 436)
Name: NF18204_low_1
Description: NF18204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18204_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 46184440 - 46184038
Alignment:
| Q |
17 |
cacaatgctgacaggaacagcctcaaattaggagccgatgtgctttcttctgctgtcaaaattctgctcta-gctcaattgtcattcccagttactattc |
115 |
Q |
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| T |
46184440 |
cacaatgctgacaggaacagcctcaaattaggagttgatgtgctttcttctgctgtcaaaattctgctctaagctcaattgtcattcccagttactattc |
46184341 |
T |
|
| Q |
116 |
aaccaattctctgcattctttgccactttaatttgtttatcatttgacagatgcagtatgcagtacagttgcacatataatctcaaattcctccactttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |
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| T |
46184340 |
aaccaattctctgcattctttgccactttaatttgtttatcatttgacagatgcagta-------catttgcacatataatctcaaattcgtccactttt |
46184248 |
T |
|
| Q |
216 |
cagccacaactaatcaaatttttcaattacaatctcctcggaatttagatatttgcccaacacctctccatacctacgataggttgaattggatttatta |
315 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46184247 |
cggccacaactaatcaaatttttcaattacaatctcctcggaatttagatatttgcccaacacctctccatacctacgataggttgaattggatttatta |
46184148 |
T |
|
| Q |
316 |
attattgatactgatttcatttcttccatttctttgctatagtattattgtttatgcaaatctaagcttaattattaaacttatggtggacaggtaagta |
415 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46184147 |
attaatgatactgatttcatttcttccatttctttgctatagtattattgtttatgcaaatctaagcttaattattaaatttatggtggacaggtaagta |
46184048 |
T |
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| Q |
416 |
atattatatt |
425 |
Q |
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|||||||||| |
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| T |
46184047 |
atattatatt |
46184038 |
T |
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