View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18204_low_2 (Length: 325)
Name: NF18204_low_2
Description: NF18204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18204_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 4301462 - 4301768
Alignment:
| Q |
19 |
ggcggctcatccacaaccaacgtcgacggcatcatatgggcttgagacaacgaagggttccatcatagcaaaacgggtgtgtttcatggttaaattagtt |
118 |
Q |
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| T |
4301462 |
ggcggctcatccacaaccaacgtcgacggcatcatatgggcttgagacaacgaagggctccatcatagcaaaacgggtgtgtttcatggttaaattagtt |
4301561 |
T |
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| Q |
119 |
tggagaccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgatt |
218 |
Q |
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| T |
4301562 |
tggagaccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgatt |
4301661 |
T |
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| Q |
219 |
ctgaagacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataa |
318 |
Q |
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| T |
4301662 |
ctgaagacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataa |
4301761 |
T |
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| Q |
319 |
aaatatt |
325 |
Q |
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| T |
4301762 |
aaatatt |
4301768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 33959167 - 33959044
Alignment:
| Q |
125 |
ccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaag |
224 |
Q |
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| T |
33959167 |
ccattcattgcatcatcagttgagaaatcaatcaaagcaaacaatggttatgtttcacgaaaggagcataagtcaaatacaaagcaagatgattctgaag |
33959068 |
T |
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| Q |
225 |
acattgatgaagccaattctgaag |
248 |
Q |
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| T |
33959067 |
acatagatgaagccaagtctgaag |
33959044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 40668093 - 40668178
Alignment:
| Q |
240 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatatt |
325 |
Q |
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| T |
40668093 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatatt |
40668178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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