View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18205_high_12 (Length: 318)
Name: NF18205_high_12
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18205_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 61 - 284
Target Start/End: Complemental strand, 26637963 - 26637740
Alignment:
| Q |
61 |
atattggttcggtggtgtagtatctatttctcaagttgttctacaagaagggaaagacaacgatcgaaaggaagagaggaactaagattaaaaacagtag |
160 |
Q |
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|||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
26637963 |
atattggttccgtggtgttatatccatttctcaagttgttctacaagaagggaaagacaacgatcgaaagaaagagaggaactaagattaaaaacaatac |
26637864 |
T |
|
| Q |
161 |
actacactaacataatgtctcttactttcatattatatgcacctttaagctttcacctactttcgacttaatccttaacctcttattcattctcttcctt |
260 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26637863 |
actacactaacataatatctcttactttcatattatatgcacctttaagctttcacctactttcaacttaatccttaacctcttattcattctcttcctt |
26637764 |
T |
|
| Q |
261 |
tccaattttatacaacagttgact |
284 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
26637763 |
tccaattttatacaacagttgact |
26637740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 55 - 284
Target Start/End: Complemental strand, 26629582 - 26629353
Alignment:
| Q |
55 |
aaatagatattggttcggtggtgtagtatctatttctcaagttgttctacaagaagggaaagacaacgatcgaaaggaagagaggaactaagattaaaaa |
154 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26629582 |
aaatagatattggttcggtggtgttgtatccatttctcaagttgttctacaagaagggaaagacaacgatcgaaagaaagagaggaactaagattaaaaa |
26629483 |
T |
|
| Q |
155 |
cagtagactacactaacataatgtctcttactttcatattatatgcacctttaagctttcacctactttcgacttaatccttaacctcttattcattctc |
254 |
Q |
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|| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
26629482 |
caatagactaaactaacataatatctcttactttcatattatatgcaccattaagctatcacctactttcaacttaattcttaacctcttattcattctc |
26629383 |
T |
|
| Q |
255 |
ttcctttccaattttatacaacagttgact |
284 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
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|
| T |
26629382 |
ttcctttccaatttaatacaacagttgact |
26629353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 80 - 284
Target Start/End: Complemental strand, 26614498 - 26614294
Alignment:
| Q |
80 |
gtatctatttctcaagttgttctacaagaagggaaagacaacgatcgaaaggaagagaggaactaagattaaaaacagtagactacactaacataatgtc |
179 |
Q |
| |
|
||||| |||| ||||||||||||| |||| |||||| |||||||| ||||| ||||||||||| | |||| ||| || || |||||||||||||||| || |
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|
| T |
26614498 |
gtatcaatttttcaagttgttctaaaagatgggaaacacaacgattgaaagaaagagaggaacaacgatttaaagcaatacactacactaacataatatc |
26614399 |
T |
|
| Q |
180 |
tcttactttcatattatatgcacctttaagctttcacctactttcgacttaatccttaacctcttattcattctcttcctttccaattttatacaacagt |
279 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||| | |
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|
| T |
26614398 |
tcttacattcatattatatgcacctttaaactttcatctactttcaccttaatccttaacctcttatacattcttttcacttccaattttatacaacaat |
26614299 |
T |
|
| Q |
280 |
tgact |
284 |
Q |
| |
|
||||| |
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|
| T |
26614298 |
tgact |
26614294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 26717402 - 26717297
Alignment:
| Q |
163 |
tacactaacataatgtctcttactttcatattatatgcacctttaagctttcacctactttcgacttaatccttaacctcttattcattctcttcctttc |
262 |
Q |
| |
|
||||||| ||| || ||||||| |||||||||||||||||||||| |||||| ||| |||| |||| ||||||||||| |||||||||| |||| ||| |
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| T |
26717402 |
tacactatcattatttctcttatattcatattatatgcacctttaacctttcatctattttcaactttctccttaacctcctattcattcttttcccttc |
26717303 |
T |
|
| Q |
263 |
caattt |
268 |
Q |
| |
|
||||| |
|
|
| T |
26717302 |
taattt |
26717297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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