View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18205_high_4 (Length: 638)

Name: NF18205_high_4
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18205_high_4
NF18205_high_4
[»] chr4 (3 HSPs)
chr4 (18-621)||(2898863-2899466)
chr4 (22-251)||(2885069-2885298)
chr4 (463-621)||(2885392-2885550)
[»] chr2 (6 HSPs)
chr2 (36-223)||(44224641-44224828)
chr2 (36-160)||(44212538-44212662)
chr2 (36-223)||(44235451-44235638)
chr2 (578-621)||(44224397-44224440)
chr2 (578-619)||(44212233-44212274)
chr2 (578-619)||(44235214-44235255)
[»] chr7 (2 HSPs)
chr7 (31-208)||(39576462-39576639)
chr7 (123-223)||(39549512-39549612)
[»] chr3 (1 HSPs)
chr3 (86-191)||(49771134-49771239)
[»] chr1 (1 HSPs)
chr1 (90-154)||(2150569-2150633)


Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 621
Target Start/End: Complemental strand, 2899466 - 2898863
Alignment:
Q  18 ttctcagtggttatgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||    
T  2899466 ttctcagtggttatgcttatgtttaatggattggctgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagaccttctgttttttc 2899367  T
Q  118 cttcttgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggatt 217  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2899366 cttcatgggcatatgctatacctacatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggatt 2899267  T
Q  218 cgatccggatgttacgaggtaaagaaccttccttatctatttacagcatgtctaaactactcgttctagattttaatgctcattggatcgcaattcttga 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2899266 cgatccgaatgttacgaggtaaagaaccttccttatctatttacagcatgtctaaactactcgttctagattttaatgctcattggatcgcaattcttga 2899167  T
Q  318 tattttggagaatcacaatgaaatgcagtttacctgactacaaaactcagtaatgttgaggtcatagaaacgttaaaaaccacgactttgaagcctagat 417  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2899166 tattttggagaatcacaatgaaatgcggtttacctggctacaaaactcagtaatgttgaggtcgtagaaacgttaaaaaccacgactttgaagcctagat 2899067  T
Q  418 catggtcacggatcttattttaaaacctcttgtcccccttgaagatagtgttactaatgatgtgaggttttgttacttatgcagattactaaagcagtat 517  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2899066 catggtcgtggatcttattttaaaacctattgtcccccttgaagatagtgttactaatgatgtgaggtattgttacttatgcagattactaaagcagtat 2898967  T
Q  518 cttctgctattactgataaaccaaatggcttctggactatttcgagctattgctgcactcggtagaaacatgattgtggccaacacatttggatcctttg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2898966 cttctgctattactgataaaccaaatggcttctggactatttcgagctattgcagcacttggtagaaacatgattgtggccaacacatttggatcctttg 2898867  T
Q  618 cact 621  Q
    ||||    
T  2898866 cact 2898863  T

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Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 2885069 - 2885298
Alignment:
Q  22 cagtggttatgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttc 121  Q
    |||| |||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2885069 cagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgctaagcttcctagtttctacaagcaaagagaccttctgttttttccttc 2885168  T
Q  122 ttgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgat 221  Q
     ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  2885169 atgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttgctgcttgggtttttctcacctattacgtaataggattcgat 2885268  T
Q  222 ccggatgttacgaggtaaagaaccttcctt 251  Q
    ||  ||||||||||||||||||||||||||    
T  2885269 ccaaatgttacgaggtaaagaaccttcctt 2885298  T

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Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 463 - 621
Target Start/End: Original strand, 2885392 - 2885550
Alignment:
Q  463 tagtgttactaatgatgtgaggttttgttacttatgcagattactaaagcagtatcttctgctattactgataaaccaaatggcttctggactatttcga 562  Q
    |||||||| | ||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2885392 tagtgttatttatggtgtgaggtattgttatttatgcaggttactaaagcagtatcttctgctattactgataaaccaaatggcttctggactatttcga 2885491  T
Q  563 gctattgctgcactcggtagaaacatgattgtggccaacacatttggatcctttgcact 621  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  2885492 gctattgcagcacttggtagaaacatgattgtggccaatacatttgggtcctttgcact 2885550  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 44224828 - 44224641
Alignment:
Q  36 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 135  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44224828 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44224729  T
Q  136 tacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatcc 223  Q
    | ||| | ||||| |||||||||||  || ||||  |||||||| || ||||||| || || ||||| ||||| || ||||| |||||    
T  44224728 ttccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatcc 44224641  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 44212662 - 44212538
Alignment:
Q  36 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 135  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44212662 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44212563  T
Q  136 tacctgcatggatcctcaagattcc 160  Q
    | ||| ||||||| |||||||||||    
T  44212562 ttccttcatggattctcaagattcc 44212538  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 44235638 - 44235451
Alignment:
Q  36 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 135  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44235638 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44235539  T
Q  136 tacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatcc 223  Q
    | ||| | ||||| ||||||||||| ||  ||||  |||||||| || | ||||| || || ||||| ||||| || ||||| |||||    
T  44235538 ttccttcgtggattctcaagattcccatctcattagtggaagtttctctatgggtgtttcttacctactatgttattggatttgatcc 44235451  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 578 - 621
Target Start/End: Complemental strand, 44224440 - 44224397
Alignment:
Q  578 ggtagaaacatgattgtggccaacacatttggatcctttgcact 621  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||    
T  44224440 ggtagaaacatgattgttgccaatacatttgggtcctttgcact 44224397  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 619
Target Start/End: Complemental strand, 44212274 - 44212233
Alignment:
Q  578 ggtagaaacatgattgtggccaacacatttggatcctttgca 619  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  44212274 ggtagaaacatgattgttgccaatacatttgggtcctttgca 44212233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 619
Target Start/End: Complemental strand, 44235255 - 44235214
Alignment:
Q  578 ggtagaaacatgattgtggccaacacatttggatcctttgca 619  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  44235255 ggtagaaacatgattgttgccaatacatttgggtcctttgca 44235214  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 39576639 - 39576462
Alignment:
Q  31 tgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcata 130  Q
    ||||||||||||||||||| |||||||||||||||||| |||  | ||||||    || |||||||||||||||||||| || || ||||||||||||||    
T  39576639 tgcttatgtttaatggatttgctgaactttcaatgaccgttgtgaggcttcccgtgttttacaagcaaagagaccttctcttctacccttcttgggcata 39576540  T
Q  131 ttctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgt 208  Q
    |  | | ||| |||||||||| || || ||| | || |||   ||||  |||||||||   |||||||||||||||||    
T  39576539 tggtcttccttcatggatccttaaaatccctgtaacgtttgctgaagcagctgtttggacattcctcacctattatgt 39576462  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 39549612 - 39549512
Alignment:
Q  123 tgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatc 222  Q
    ||||||||| || | |||||||||||||| || || ||  | || ||| ||||||||||||||||||| ||||| ||||| ||||| || || |||||||    
T  39549612 tgggcatatgctcttcctgcatggatcctaaaaatccccttaacttttgtggaagttgctgtttgggtattccttacctactatgtcattggtttcgatc 39549513  T
Q  223 c 223  Q
    |    
T  39549512 c 39549512  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 49771134 - 49771239
Alignment:
Q  86 tttctacaagcaaagagaccttctattttatccttcttgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtt 185  Q
    |||||| |||||||| ||||||||  |||  ||| |||||||||||||| | ||| | |||||||| ||||||||||| || ||| | ||||||| | ||    
T  49771134 tttctataagcaaagggaccttctgcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttggtatt 49771233  T
Q  186 tgggtt 191  Q
    ||||||    
T  49771234 tgggtt 49771239  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 2150633 - 2150569
Alignment:
Q  90 tacaagcaaagagaccttctattttatccttcttgggcatattctatacctgcatggatcctcaa 154  Q
    |||||||||||||| ||||| || |||||||| ||||| |||||| | ||  |||||||||||||    
T  2150633 tacaagcaaagagatcttcttttctatccttcatgggcttattctcttccaccatggatcctcaa 2150569  T

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