View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18205_high_9 (Length: 464)
Name: NF18205_high_9
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18205_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 43069647 - 43069243
Alignment:
| Q |
20 |
tgatggcataaactagcttacgaacgagttttatatatgccggaggtgcatgcaggattcaaccagtgtgctacttccttttccttctacctaacaaac- |
118 |
Q |
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| T |
43069647 |
tgatggcataaactagcttacgaacgagttttat----gccggaggtgca----ggattcaaccagtgtgctacttccttttccttctacctaacaaaca |
43069556 |
T |
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| Q |
119 |
---tactactaacatttccacctttatccaaacagttacactagaaatcctatcaccatgtggaaaacataagagtgaggagacactcatcgtgatcaat |
215 |
Q |
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| T |
43069555 |
aactactactaacatttccacctttatccaaacagttacactggaaaccctatcaccatatggaaaacataagagtgaggagacactcat---gatcaat |
43069459 |
T |
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| Q |
216 |
catctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaata-ttttgtgcatgaaa |
314 |
Q |
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| T |
43069458 |
catctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaatatttttgtgcatgaaa |
43069359 |
T |
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| Q |
315 |
tgaaacaaaaagctcttacaagattgaatttcaaaagnnnnnnngtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattata |
414 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069358 |
tgaaacaaaaagctcttacaagattgaatttcaaaagtttttttgtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattata |
43069259 |
T |
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| Q |
415 |
caagctcctcttgaag |
430 |
Q |
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| T |
43069258 |
caagctcctcttgaag |
43069243 |
T |
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