View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18205_low_14 (Length: 262)
Name: NF18205_low_14
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18205_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 2470748 - 2470940
Alignment:
| Q |
17 |
cataggaaggaattatgctaccagcgagacttaacttccgttggtaagttatcgaacgtgagtcggcgtgagttaactcatgttgggggtattttcggta |
116 |
Q |
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| T |
2470748 |
cataggaaggaattatgctaccaacgagacttaacttccgttggtaagttattgaacgtgaatcggcgtgagttaactcatgttgggggtattttcggta |
2470847 |
T |
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| Q |
117 |
gcttatgtgggaatgagcaattttgatttggagaagggcaattttatgaaagtatttatatacttattaaagtttcattcgaaagttgtacct |
209 |
Q |
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| T |
2470848 |
gcttatgtgggaatgagcaattttgatttggagaagagcaattttatgaaagtatttatatacttattaaagtttcattcgaaagttgtacct |
2470940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 7078472 - 7078394
Alignment:
| Q |
83 |
cgtgagttaactcatgttgggggtattttcggtagcttatgtgggaatgagcaattttgatttggagaagggcaatttt |
161 |
Q |
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| T |
7078472 |
cgtgagttaactcacattggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaatttt |
7078394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 8814204 - 8814282
Alignment:
| Q |
83 |
cgtgagttaactcatgttgggggtattttcggtagcttatgtgggaatgagcaattttgatttggagaagggcaatttt |
161 |
Q |
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| T |
8814204 |
cgtgagttaactcacattggagttatttttggtagtttatgtaggaatgagcaattttgattgggagaagagcaatttt |
8814282 |
T |
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