View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18205_low_15 (Length: 248)

Name: NF18205_low_15
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18205_low_15
NF18205_low_15
[»] chr7 (4 HSPs)
chr7 (1-229)||(26629990-26630212)
chr7 (1-229)||(26614620-26614847)
chr7 (1-60)||(28770334-28770393)
chr7 (132-229)||(28770156-28770253)
[»] chr1 (4 HSPs)
chr1 (1-61)||(43134868-43134928)
chr1 (1-62)||(14912764-14912825)
chr1 (124-229)||(17998356-17998461)
chr1 (13-53)||(17998236-17998276)
[»] chr5 (3 HSPs)
chr5 (2-65)||(32421339-32421402)
chr5 (122-210)||(36562323-36562411)
chr5 (13-61)||(36562483-36562531)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-51)||(99838-99888)
[»] chr8 (1 HSPs)
chr8 (2-51)||(27575518-27575567)
[»] chr3 (2 HSPs)
chr3 (13-58)||(328269-328314)
chr3 (31-60)||(11486448-11486477)
[»] chr2 (1 HSPs)
chr2 (2-51)||(25966927-25966976)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26629990 - 26630212
Alignment:
Q  1 aattaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataaaattcaaaatagaattaattcaaaggttacgacatcattaaactaagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||    
T  26629990 aattaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataaaatt------agaattaattcaaaggttacgacatcattaaactaagct 26630083  T
Q  101 ctgccacctcatccctacaatgcctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctc 200  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  26630084 ctgccacctcatccctaccacgcctacaacaataaacctgccctccatgaaccccccacatgattgcttccaaatgactccattcatcagtcccttgctc 26630183  T
Q  201 caccccaccactgaccatgacggcataga 229  Q
    | || ||||||||||||||||| ||||||    
T  26630184 cgccacaccactgaccatgacgacataga 26630212  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26614620 - 26614847
Alignment:
Q  1 aattaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataaaattcaaaatagaattaattcaaaggttacgacatcattaaactaagct 100  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||  ||||||||| ||     
T  26614620 aattaaaaatagaaattatccaaatgctataaaccaaatgttcaaacataaaattcaaaatagaaataatccaaaggttacaacactattaaactaggcc 26614719  T
Q  101 ctgccacctcatccctacaatgcctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctc 200  Q
    | |||||| |  || ||| | |||||| |  ||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  26614720 ccgccacccccacc-taccacgcctacggtgataaacccgccttccatgaacctcccccatgattgcttccaaatgactccattcatcagtcccttgctc 26614818  T
Q  201 caccccaccactgaccatgacggcataga 229  Q
    |||| || || || |||||||||||||||    
T  26614819 caccacatcattggccatgacggcataga 26614847  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28770393 - 28770334
Alignment:
Q  1 aattaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataaaattcaaaa 60  Q
    |||| ||||| ||||||||||||| |||| ||||| |||||||||||||||||| |||||    
T  28770393 aatttaaaactgaaattatccaaaggttacaaacccaatgttcaaacataaaatgcaaaa 28770334  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 28770253 - 28770156
Alignment:
Q  132 ataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacggcataga 229  Q
    ||||||| | |||||||||||||||   |  |||||||| |||||||||||||||||| | |||| | ||||| ||||||| | ||||| || |||||    
T  28770253 ataaacccgtcctccatgaacctccgctagaattgcttccaaatgactccattcatcaataccttacgccaccacaccactaatcatgatggaataga 28770156  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43134868 - 43134928
Alignment:
Q  1 aattaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataaaattcaaaat 61  Q
    |||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  43134868 aatttaaaacagaaattatccaaaggttacaaaccaaatgtccaaacataaaatttaaaat 43134928  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14912825 - 14912764
Alignment:
Q  1 aattaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataaaattcaaaata 62  Q
    ||||||||||| ||||||||||||||||| |||||||||||  | |||||||||| ||||||    
T  14912825 aattaaaaacacaaattatccaaatgttacaaaccaaatgtcaatacataaaattaaaaata 14912764  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 17998356 - 17998461
Alignment:
Q  124 ctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacgg 223  Q
    |||| |||||||||  | |||||||||||||||   |  |||||||| |||||||||||||||||| | |||||| ||||| ||| ||| ||||||||||    
T  17998356 ctacggcaataaactcgtcctccatgaacctccactagaattgcttccaaatgactccattcatcaataccttgcaccaccacactactaaccatgacgg 17998455  T
Q  224 cataga 229  Q
     |||||    
T  17998456 aataga 17998461  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 17998236 - 17998276
Alignment:
Q  13 aaattatccaaatgttagaaaccaaatgttcaaacataaaa 53  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  17998236 aaattatccaaaggttacaaaccaaatgttcaaacataaaa 17998276  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 32421402 - 32421339
Alignment:
Q  2 attaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataaaattcaaaatagaa 65  Q
    |||||||| | ||| |||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  32421402 attaaaaataaaaagtatccaaaggttacaaaccaattgttcaaacataaaattcaaaatagaa 32421339  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 36562411 - 36562323
Alignment:
Q  122 gcctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccacca 210  Q
    |||||| ||||||||||||| | | ||||||||||  || ||||||||| ||||||| |||||  |||| |||||||||| || |||||    
T  36562411 gcctacggcaataaacctgctccctatgaacctcctccaggattgcttccaaatgacaccattgttcagacccttgctcccccacacca 36562323  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 36562531 - 36562483
Alignment:
Q  13 aaattatccaaatgttagaaaccaaatgttcaaacataaaattcaaaat 61  Q
    |||||||||||| |||| ||||||| |||||| ||||||||||||||||    
T  36562531 aaattatccaaaggttacaaaccaagtgttcagacataaaattcaaaat 36562483  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 99888 - 99838
Alignment:
Q  1 aattaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataa 51  Q
    ||||||||||| |||||||||||| |||| |||||||||||| | ||||||    
T  99888 aattaaaaacacaaattatccaaaggttacaaaccaaatgttaagacataa 99838  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 27575518 - 27575567
Alignment:
Q  2 attaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataa 51  Q
    |||||||| | |||||||||||| |||| ||||||| |||||||||||||    
T  27575518 attaaaaatacaaattatccaaaggttacaaaccaattgttcaaacataa 27575567  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 328314 - 328269
Alignment:
Q  13 aaattatccaaatgttagaaaccaaatgttcaaacataaaattcaa 58  Q
    ||||||||||||||||| ||||||| |||| | |||||||||||||    
T  328314 aaattatccaaatgttataaaccaagtgtttacacataaaattcaa 328269  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 11486477 - 11486448
Alignment:
Q  31 aaaccaaatgttcaaacataaaattcaaaa 60  Q
    ||||||||||||||||||||||||||||||    
T  11486477 aaaccaaatgttcaaacataaaattcaaaa 11486448  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 25966976 - 25966927
Alignment:
Q  2 attaaaaacagaaattatccaaatgttagaaaccaaatgttcaaacataa 51  Q
    |||||||| | |||||||||||| |||| ||||||| |||||||||||||    
T  25966976 attaaaaatacaaattatccaaaggttacaaaccaattgttcaaacataa 25966927  T

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