View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18205_low_2 (Length: 693)

Name: NF18205_low_2
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18205_low_2
NF18205_low_2
[»] chr6 (15 HSPs)
chr6 (29-300)||(24418068-24418338)
chr6 (399-681)||(24418655-24418936)
chr6 (517-660)||(17314883-17315026)
chr6 (410-459)||(33104947-33104996)
chr6 (540-635)||(6675234-6675329)
chr6 (412-459)||(18024970-18025017)
chr6 (527-634)||(26181106-26181213)
chr6 (586-660)||(18024751-18024825)
chr6 (418-470)||(11590222-11590274)
chr6 (413-467)||(7082319-7082374)
chr6 (586-660)||(7082116-7082190)
chr6 (552-617)||(14253150-14253215)
chr6 (414-470)||(7338907-7338963)
chr6 (588-656)||(13889504-13889572)
chr6 (588-652)||(29629960-29630024)
[»] scaffold0760 (1 HSPs)
scaffold0760 (30-253)||(3869-4091)
[»] chr3 (26 HSPs)
chr3 (46-255)||(772140-772348)
chr3 (96-233)||(7334936-7335072)
chr3 (72-255)||(2455075-2455257)
chr3 (113-252)||(7428289-7428427)
chr3 (113-252)||(12217253-12217391)
chr3 (113-255)||(37758423-37758564)
chr3 (100-233)||(13497445-13497577)
chr3 (514-659)||(31608214-31608359)
chr3 (92-255)||(9566483-9566645)
chr3 (96-233)||(2491345-2491481)
chr3 (113-165)||(988702-988754)
chr3 (72-255)||(2474353-2474535)
chr3 (107-256)||(2501394-2501542)
chr3 (116-202)||(759390-759475)
chr3 (129-255)||(7443692-7443817)
chr3 (189-255)||(9585939-9586005)
chr3 (586-660)||(23483151-23483225)
chr3 (189-254)||(764362-764427)
chr3 (416-467)||(19942512-19942563)
chr3 (116-231)||(23231708-23231822)
chr3 (97-231)||(2462518-2462651)
chr3 (586-660)||(8947252-8947326)
chr3 (96-233)||(2475915-2476051)
chr3 (405-470)||(5218935-5219000)
chr3 (99-256)||(9562631-9562787)
chr3 (599-660)||(54556811-54556872)
[»] chr7 (12 HSPs)
chr7 (113-231)||(27754889-27755006)
chr7 (517-648)||(25066066-25066197)
chr7 (413-470)||(37545016-37545073)
chr7 (414-470)||(34012027-34012083)
chr7 (552-635)||(34012759-34012842)
chr7 (599-660)||(21203033-21203094)
chr7 (422-470)||(3112179-3112227)
chr7 (588-652)||(21278463-21278527)
chr7 (588-652)||(25877364-25877428)
chr7 (588-652)||(26015296-26015360)
chr7 (588-652)||(38283126-38283190)
chr7 (410-454)||(46102635-46102679)
[»] scaffold1004 (1 HSPs)
scaffold1004 (32-253)||(1375-1594)
[»] chr5 (10 HSPs)
chr5 (115-245)||(20305083-20305212)
chr5 (115-245)||(20309487-20309616)
chr5 (100-216)||(20292252-20292367)
chr5 (418-470)||(8935986-8936038)
chr5 (418-470)||(25472389-25472441)
chr5 (416-459)||(29385515-29385558)
chr5 (421-470)||(8782783-8782832)
chr5 (414-459)||(12188497-12188542)
chr5 (113-165)||(23764968-23765020)
chr5 (113-165)||(23814816-23814868)
[»] chr2 (5 HSPs)
chr2 (33-255)||(33037374-33037595)
chr2 (413-470)||(43652901-43652958)
chr2 (50-201)||(33023515-33023665)
chr2 (556-673)||(43653051-43653166)
chr2 (514-635)||(35006308-35006429)
[»] scaffold0097 (1 HSPs)
scaffold0097 (92-256)||(33896-34059)
[»] chr8 (6 HSPs)
chr8 (556-652)||(35979423-35979519)
chr8 (514-649)||(16584501-16584635)
chr8 (586-660)||(7988135-7988209)
chr8 (421-470)||(5458238-5458287)
chr8 (588-652)||(3136692-3136756)
chr8 (588-652)||(5988711-5988775)
[»] chr4 (8 HSPs)
chr4 (586-660)||(15506406-15506480)
chr4 (552-660)||(7818287-7818395)
chr4 (518-652)||(42130983-42131117)
chr4 (414-470)||(7326499-7326555)
chr4 (413-470)||(1536991-1537048)
chr4 (588-652)||(10541579-10541643)
chr4 (414-458)||(11162696-11162740)
chr4 (113-165)||(22672850-22672902)
[»] scaffold0570 (1 HSPs)
scaffold0570 (552-660)||(3855-3963)
[»] scaffold0062 (1 HSPs)
scaffold0062 (588-652)||(41088-41152)
[»] chr1 (1 HSPs)
chr1 (588-652)||(40400585-40400649)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 24418068 - 24418338
Alignment:
Q  29 ttgaaaaatcagagggtattggggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaag 128  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24418068 ttgaaaaatcagagggtattagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagcgaag 24418167  T
Q  129 gtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaat 228  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  24418168 gtgcttgtttgcgaatttgggatcagagattaatg-aattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaat 24418266  T
Q  229 ctcagctacaagatcgaagggaagagtttttgacggtggtattagggtttcctctctatctggcgccattag 300  Q
    ||||||||||||||||||||||||||||  ||| || | |||||||||||||||  |  |||||||||||||    
T  24418267 ctcagctacaagatcgaagggaagagttggtgatggcgatattagggtttcctccatgcctggcgccattag 24418338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 399 - 681
Target Start/End: Original strand, 24418655 - 24418936
Alignment:
Q  399 ttatgcaaaacaatgaatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaatttca-------ccaaaactatcctttcatc 491  Q
    |||| ||||||||||||||||||||||| || || |||||||| | ||||||||| |||||||||||||||| |       |||||| |||||||||||     
T  24418655 ttatacaaaacaatgaatttttctagtcgcaccctatatatttctagttacaccccaatttatttaaaattttagaatataccaaaattatcctttcatt 24418754  T
Q  492 tgaattttcttacacctgtgatttcattgtcactttaaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagatta 591  Q
    ||||||||||||||  ||||||||||||         |||||||||||||||| ||| ||||||||||||||||||| | || || ||||||| ||||||    
T  24418755 tgaattttcttacaattgtgatttcatt---------aactttcactatctttcacccaaaaacaatcatggatgttcagtcaatctcaataaaagatta 24418845  T
Q  592 acgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctct-tttttcaatgaagttgagtgtctat 681  Q
    | |||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||  | | ||||||||||| ||||||| |||||    
T  24418846 aagagttaataaaaacgtctttcatccatactatattgcatataggtaattgaatttttttatttatttttcaatgatgttgagtttctat 24418936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 517 - 660
Target Start/End: Complemental strand, 17315026 - 17314883
Alignment:
Q  517 attgtcactttaaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcat 616  Q
    ||||| ||| |||| ||||||| ||||| | | | ||||||||||| ||||| |||| || |  ||||  |||||| |||| ||||||||  | ||||||    
T  17315026 attgttactctaaaatttcactctctttcagccacaaacaatcatgaatgttcaatcaatctttataaaggattaaagagtgaatcaaaacatatttcat 17314927  T
Q  617 ccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||| ||||||||||| |||  ||||||||||| |||||||    
T  17314926 ccatactctattgcatataagtaactgaatttcttcttcttttt 17314883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 33104947 - 33104996
Alignment:
Q  410 aatgaatttttctagtcacaacccatatattttttgttacacccaaattt 459  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  33104947 aatgaatttttctattcacaccccatatatttttggttacacccaaattt 33104996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 635
Target Start/End: Original strand, 6675234 - 6675329
Alignment:
Q  540 tcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatccatactatattgcatata 635  Q
    ||||| ||||| ||| ||||||||||||| |||| || || |||  ||||||| |||| ||||||||  |||||||||||||||  ||||||||||    
T  6675234 tctttcaccaacaaataatcatggatgttcaatcaatctctatagaagattaaagagtgaatcaaaacatctttcatccatactcgattgcatata 6675329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 18025017 - 18024970
Alignment:
Q  412 tgaatttttctagtcacaacccatatattttttgttacacccaaattt 459  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  18025017 tgaatttttctattcacatcccatatattttttgttacccccaaattt 18024970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 634
Target Start/End: Original strand, 26181106 - 26181213
Alignment:
Q  527 taaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatccatactata 626  Q
    |||||||||||| ||||| ||| | ||||||||||| ||||| |||| || | ||| | ||||||| |||| |||||||| |||||  |||| |||| ||    
T  26181106 taaactttcactctctttcacccacaaacaatcatgaatgttcaatcaatctaaatgaaagattaaggagtaaatcaaaacgtcttaaatccttactcta 26181205  T
Q  627 ttgcatat 634  Q
    ||||||||    
T  26181206 ttgcatat 26181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 660
Target Start/End: Complemental strand, 18024825 - 18024751
Alignment:
Q  586 agattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||| |||| ||||||||  |||||||||||||||  |||||||||| |||  ||||||||||| |||||||    
T  18024825 agattaaggagtgaatcaaaaaatctttcatccatactcgattgcatataagtaactgaatttcttcttcttttt 18024751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 11590222 - 11590274
Alignment:
Q  418 tttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    ||||||||| || |||||||| || | ||||||||||||||||||||||||||    
T  11590222 tttctagtctcatcccatataattctagttacacccaaatttatttaaaattt 11590274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 7082374 - 7082319
Alignment:
Q  413 gaatttttctagtcacaacccatatattttttgttacacc-caaatttatttaaaa 467  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |||||||| ||||||    
T  7082374 gaatttttctattcacaccccatatattttttgttaaacctcaaatttacttaaaa 7082319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 660
Target Start/End: Complemental strand, 7082190 - 7082116
Alignment:
Q  586 agattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||| |||| ||||||||| ||| ||||||| |||  |||||||||| |||  ||||||||||| |||||||    
T  7082190 agattaaagagtgaatcaaaatatctctcatccaaactcgattgcatataagtaagtgaatttcttcttcttttt 7082116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 617
Target Start/End: Original strand, 14253150 - 14253215
Alignment:
Q  552 aaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatc 617  Q
    ||||||||||||||||| |||| || || |||| ||||||| |||| ||||||||| | |||||||    
T  14253150 aaacaatcatggatgttcaatcaatctctataaaagattaaagagtgaatcaaaatatttttcatc 14253215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 7338907 - 7338963
Alignment:
Q  414 aatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    |||| ||||| ||||| || ||||||||||||||||||  ||||||| |||||||||    
T  7338907 aattattctactcacaccctatatattttttgttacacttaaatttacttaaaattt 7338963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 656
Target Start/End: Original strand, 13889504 - 13889572
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctct 656  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| |||  |||||||||||||||    
T  13889504 attaaagagtgaatcaaaatatttttcatccatactcaattgaatataagtaagtgaatttcttcctct 13889572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 29629960 - 29630024
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  29629960 attaaagagtgaatcaaaatatttttcatccatactcaattgaatataagtaattgaatttcttc 29630024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 4091 - 3869
Alignment:
Q  30 tgaaaaatcagagggtattggggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaagg 129  Q
    ||||||||||||||||||||| |||| |||||||| ||| |  ||||||| ||||||||   ||| || |||||| |||||| | ||||||||  |||||    
T  4091 tgaaaaatcagagggtattggtgaatcaaagagaagtaactcgcctaagttgttggtagtgcttaccaagaggtggtggcgctttgttgacaactgaagg 3992  T
Q  130 tgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatc 229  Q
    ||||| ||  |||||||  ||||||| ||| ||| | || || |||||||| |  ||||||| |||||||||||| || ||||||||||||||||| ||     
T  3991 tgcttcttaccgaatttatgatcagaaatt-aaggatttgaaagacttgcagacgcagcgaaattgaaggagtaatttcacgggaagcctacacaggatt 3893  T
Q  230 tcagctacaagatcgaagggaaga 253  Q
    || || |||||||| || ||||||    
T  3892 tcggcaacaagatctaacggaaga 3869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 255
Target Start/End: Original strand, 772140 - 772348
Alignment:
Q  46 attggggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatt 145  Q
    ||||| |||| | |||||| ||| | |||||||| |||||||||  ||||||| ||| | |  ||  |||||||||   |||||||||| || || ||||    
T  772140 attggagaatcatagagaaataacttacctaagttgttggtagatcttaacattaggcggttacgtttggttgacatttgaaggtgctttttagcaaatt 772239  T
Q  146 tgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcga 245  Q
    |||||||||| |||| || | |||||||||||||| || |||||||| || | ||||||||| || |||||||  ||||||||||| || ||||||||||    
T  772240 tgggatcagatattagagta-ttaaaggacttgcagaggcagcgaagctgcacgagtaactttacaggaagccggcacagaatctccgccacaagatcga 772338  T
Q  246 agggaagagt 255  Q
    | ||||||||    
T  772339 atggaagagt 772348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 7334936 - 7335072
Alignment:
Q  96 catgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttg 195  Q
    ||||||||| |||||| | ||||||||  |||||||||| ||||||||||| ||||||||||| | || |||||||| |||| || ||||| ||||| ||    
T  7334936 catgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacag-aattaaagaacttacagagacatcgaagctg 7335034  T
Q  196 aaggagtaacttgacgggaagcctacacagaatctcag 233  Q
     | |||||| || || ||||||||||||||||||||||    
T  7335035 tacgagtaatttcaccggaagcctacacagaatctcag 7335072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 2455257 - 2455075
Alignment:
Q  72 acctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaa 171  Q
    |||||||| |||||||||  ||||||| ||||| |||||   ||||||||   |||||||||| || || |||||||||||||| || | |||| |||||    
T  2455257 acctaagttgttggtagatcttaacattaggtggtggcgtgcggttgacatttgaaggtgctttttagcaaatttgggatcagatataagagaa-ttaaa 2455159  T
Q  172 ggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagagt 255  Q
    ||||||||| || |||||||| || | ||||||||| || |||||||  |||||||| || || || |||||||| ||||||||    
T  2455158 ggacttgcagaggcagcgaagctgcacgagtaacttcacaggaagccggcacagaatttccgccacgagatcgaatggaagagt 2455075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 7428289 - 7428427
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgg 212  Q
    |||||||||||||||| ||||| | ||| |||||||||||||||||||||| |||| ||| |||| || || |||||||| |||| ||||||||| || |    
T  7428289 tggttgacaagcgaagatgcttctctgcaaatttgggatcagagattaaag-aattgaagcacttacagaggcagcgaagctgaatgagtaactttaccg 7428387  T
Q  213 gaagcctacacagaatctcagctacaagatcgaagggaag 252  Q
    |||  ||||||| ||| || || |||||||| || |||||    
T  7428388 gaattctacacaaaatttctgcaacaagatcaaacggaag 7428427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 12217391 - 12217253
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgg 212  Q
    |||||||||||||||| || || | ||| |||||||||||||||||||||| |||| |||||||| || || |||||||| |||| ||||||||| || |    
T  12217391 tggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaag-aattgaaggacttacagaggcagcgaagctgaatgagtaactttaccg 12217293  T
Q  213 gaagcctacacagaatctcagctacaagatcgaagggaag 252  Q
    |||  ||||||| ||| || || |||||||| || |||||    
T  12217292 gaattctacacaaaatttctgcaacaagatcaaacggaag 12217253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 37758423 - 37758564
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgg 212  Q
    |||||||||  ||||| ||||| || ||||||||||||||  ||||||||||| || ||||||||||| || || || ||||| | |||||||||||| |    
T  37758423 tggttgacatacgaagatgcttcttagcgaatttgggatccaagattaaagaa-ttcaaggacttgcagaggcatcggagttgtaagagtaacttgacag 37758521  T
Q  213 gaagcctacacagaatctcagctacaagatcgaagggaagagt 255  Q
    |||||||||| ||||| || || || | |||||| ||||||||    
T  37758522 gaagcctacatagaatttctgccaccaaatcgaaaggaagagt 37758564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 13497577 - 13497445
Alignment:
Q  100 aggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaagg 199  Q
    ||||| |||||| ||||||||||  |||||||||| ||||||||||  ||||||||||| |||| |||||||  ||||||| || || |||||||| |      
T  13497577 aggtggtggcgcatggttgacaaatgaaggtgcttctttgcgaattcaggatcagagatcaaag-aattaaaaaacttgcagaggcatcgaagttgtaca 13497479  T
Q  200 agtaacttgacgggaagcctacacagaatctcag 233  Q
    |||||||| || ||||||||||| || |||||||    
T  13497478 agtaacttcaccggaagcctacaaaggatctcag 13497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 514 - 659
Target Start/End: Complemental strand, 31608359 - 31608214
Alignment:
Q  514 ttcattgtcactttaaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtcttt 613  Q
    |||||| || || |||| ||||||||||||| ||| |  |||||||||||||||| |||| || || |||  ||||||| || | |||||||   |||||    
T  31608359 ttcattatcgctctaaaatttcactatctttcacccaggaacaatcatggatgttcaatcaatctctatagaagattaaagaataaatcaaagcatcttt 31608260  T
Q  614 catccatactatattgcatataggtatttgaatttcttcctctttt 659  Q
    |||||||||| ||||||||||| |||  ||||||||||| ||||||    
T  31608259 catccatactttattgcatataagtaagtgaatttcttcttctttt 31608214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 9566483 - 9566645
Alignment:
Q  92 ttaacatgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaa 191  Q
    |||||||||||||||||||| | ||||||||  |||| || || ||||||||||| |||||||| || | || |||| ||||||||||| || || ||||    
T  9566483 ttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagag-aattgaaggacttgcagaggcaccgaa 9566581  T
Q  192 gttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagagt 255  Q
    | ||   |||||| || | |||||||||||| ||||||||||  |  | |||||||||||||||    
T  9566582 gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagt 9566645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 2491481 - 2491345
Alignment:
Q  96 catgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttg 195  Q
    ||||||||| |||||| | ||||||||  |||| ||||| ||||||||||| |||||||| ||||||| |||| ||  |||| ||||| || ||||| ||    
T  2491481 catgaggtggtggcgctttgttgacaattgaagatgcttttttgcgaatttaggatcagaaattaaag-aattgaaaaacttacaaaggcatcgaagctg 2491383  T
Q  196 aaggagtaacttgacgggaagcctacacagaatctcag 233  Q
     |  ||||| || || ||||||||||||||||||||||    
T  2491382 taccagtaatttcaccggaagcctacacagaatctcag 2491345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 988754 - 988702
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaa 165  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||||    
T  988754 tggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaa 988702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 2474535 - 2474353
Alignment:
Q  72 acctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaa 171  Q
    |||||||| |||| ||||  ||| ||||||||| |||||| || |||| ||  ||||||| || ||||||||| ||||||  || ||||||||| |||||    
T  2474535 acctaagtagttgctagatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaa-ttaaa 2474437  T
Q  172 ggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagagt 255  Q
    | |||| || || || ||||| || |   |||| ||||||||||||||||| ||||||||||  |  ||||| |||||||||||    
T  2474436 gaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagt 2474353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 256
Target Start/End: Complemental strand, 2501542 - 2501394
Alignment:
Q  107 ggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaact 206  Q
    ||||| |||||||||  ||||| || || ||||||||||| |||||||| ||||||| |||| ||| |||| ||||| || ||||| || |  ||||| |    
T  2501542 ggcgcttggttgacatacgaagatgtttctttgcgaatttaggatcagaaattaaag-aattgaagaacttacaaaggcatcgaagctgtactagtaatt 2501444  T
Q  207 tgacgggaagcctacacagaatctcagctacaagatcgaagggaagagtt 256  Q
    | || |||||||| |||||||||||||  | |||||||||  ||||||||    
T  2501443 tcaccggaagcctgcacagaatctcaggcaaaagatcgaaaagaagagtt 2501394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 759390 - 759475
Alignment:
Q  116 ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagt 202  Q
    |||||||||||||||| || ||||| || |||||||| |||| || || |||| ||||||||||||| ||| |||||| ||||||||    
T  759390 ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatag-aattgaaggacttgcaaacacatcgaagtagaaggagt 759475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 7443692 - 7443817
Alignment:
Q  129 gtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaat 228  Q
    |||||| || ||||| ||||||||||| ||||||||| || ||| |||| || || || |||||||| | |||||| || || |||||||| || |||||    
T  7443692 gtgcttcttggcgaaattgggatcagaaattaaagaa-ttgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaat 7443790  T
Q  229 ctcagctacaagatcgaagggaagagt 255  Q
    |||||  |  |||||||||||||||||    
T  7443791 ctcagggaggagatcgaagggaagagt 7443817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 9585939 - 9586005
Alignment:
Q  189 gaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagagt 255  Q
    ||||||||||||| | ||| || ||||||||||| | ||||||||| || |||||||||||||||||    
T  9585939 gaagttgaaggaggagcttcaccggaagcctacaaaaaatctcagcaaccagatcgaagggaagagt 9586005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 660
Target Start/End: Complemental strand, 23483225 - 23483151
Alignment:
Q  586 agattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||| |||| ||||||||  |||||| |||||||| |||||||||||  || |||||||||||| |||||||    
T  23483225 agattaaagagtgaatcaaaacatctttcgtccatactctattgcatataaataattgaatttcttcttcttttt 23483151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 764362 - 764427
Alignment:
Q  189 gaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagag 254  Q
    ||||||||||||| | ||| || ||||||||||| | ||||||||| || ||||||||||||||||    
T  764362 gaagttgaaggaggagcttcactggaagcctacagaaaatctcagcaaccagatcgaagggaagag 764427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 19942563 - 19942512
Alignment:
Q  416 tttttctagtcacaacccatatattttttgttacacccaaatttatttaaaa 467  Q
    |||||||||||||| || |||||||||| ||||||||||| ||| |||||||    
T  19942563 tttttctagtcacaccctatatatttttggttacacccaattttttttaaaa 19942512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 23231708 - 23231822
Alignment:
Q  116 ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaa 215  Q
    |||| ||||||||||| || |||||||| ||||||||||||||| | |  ||| |||||||| |  ||||| |||||||| ||||| | |||||| ||||    
T  23231708 ttgataagcgaaggtgtttctttgcgaaattgggatcagagatt-agggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaa 23231806  T
Q  216 gcctacacagaatctc 231  Q
    | || || ||||||||    
T  23231807 gtctgcatagaatctc 23231822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 2462651 - 2462518
Alignment:
Q  97 atgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttga 196  Q
    |||||||| |||||   |||||||| | |||||||||| |||| |||||||| ||||||||| || |  ||| ||| |||| || || || |||||||||    
T  2462651 atgaggtggtggcggtaggttgacatgtgaaggtgcttctttgtgaatttggaatcagagat-aagggtattgaagaacttacagaggcatcgaagttga 2462553  T
Q  197 aggagtaacttgacgggaagcctacacagaatctc 231  Q
    ||||| | | | || || |||||||||||||||||    
T  2462552 aggagaagcctcactgggagcctacacagaatctc 2462518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 8947252 - 8947326
Alignment:
Q  586 agattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||| |||| ||||||||  |||||||||||||||  || ||||||| |||  ||||||||||| |||||||    
T  8947252 agattaaagagtgaatcaaaacatctttcatccatactcgatagcatataagtaagtgaatttcttcttcttttt 8947326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 2476051 - 2475915
Alignment:
Q  96 catgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttg 195  Q
    ||||||||| |||||| | ||||||||  ||||||| || ||||||||||| |||||||| || | || |||| ||  |||| ||||| || ||||| ||    
T  2476051 catgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagag-aattgaaaaacttacaaaggcaccgaagctg 2475953  T
Q  196 aaggagtaacttgacgggaagcctacacagaatctcag 233  Q
     | |||||| ||||| || | |||| ||||||||||||    
T  2475952 tacgagtaatttgacaggtaacctaaacagaatctcag 2475915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 5218935 - 5219000
Alignment:
Q  405 aaaacaatgaatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    |||| ||||| | ||||||||| || |||||||| ||   ||||||||||||||||||||||||||    
T  5218935 aaaataatgactctttctagtctcatcccatataattccagttacacccaaatttatttaaaattt 5219000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 9562631 - 9562787
Alignment:
Q  99 gaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaag 198  Q
    |||||| |||||| | ||||||||  |||||||||| ||||| ||||||||||  || ||||||||| || ||| |||  || ||||| ||||| || |     
T  9562631 gaggtggtggcgcttagttgacaattgaaggtgcttctttgcaaatttgggattggaaattaaagaa-ttgaagaactcacacagacatcgaagctgtac 9562729  T
Q  199 gagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagagtt 256  Q
     ||||| || || ||||||||||| ||||| ||||  | |||||| || |||||||||    
T  9562730 aagtaatttcaccggaagcctacagagaatttcaggcagaagatcaaaaggaagagtt 9562787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 660
Target Start/End: Complemental strand, 54556872 - 54556811
Alignment:
Q  599 aatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    |||| |||| |||||||||||||||  |||||||||| |||  ||||||||||| |||||||    
T  54556872 aatccaaatatctttcatccatactcgattgcatataagtaaatgaatttcttcttcttttt 54556811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 27755006 - 27754889
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgg 212  Q
    ||||||||||||||||||| || || || ||||| ||||| |||||||||||| ||||||||||| || || || | ||||||||| |||||||| ||||    
T  27755006 tggttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaa-ttaaaggacttacagaggcatcaaagttgaagtagtaacttcacgg 27754908  T
Q  213 gaagcctacacagaatctc 231  Q
    ||||| | |||||||||||    
T  27754907 gaagcatgcacagaatctc 27754889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 648
Target Start/End: Original strand, 25066066 - 25066197
Alignment:
Q  517 attgtcactttaaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcat 616  Q
    ||||| ||| |||| | |||| |||||| ||||| |||||||||| ||| || |||| ||| |||| | ||||||| |||| |||||||| |||||| ||    
T  25066066 attgttactctaaattatcaccatctttcaccaacaaacaatcatagatattcaatcaattccaatgaaagattaaagagtgaatcaaaacgtcttttat 25066165  T
Q  617 ccatactatattgcatataggtatttgaattt 648  Q
    ||||| | |||||||||||||||  |||||||    
T  25066166 ccatagtctattgcatataggtaagtgaattt 25066197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 470
Target Start/End: Complemental strand, 37545073 - 37545016
Alignment:
Q  413 gaatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    ||||||||||| ||||| || || ||||||||||||||||||| |||| |||||||||    
T  37545073 gaatttttctattcacaccctatgtattttttgttacacccaattttacttaaaattt 37545016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 34012027 - 34012083
Alignment:
Q  414 aatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    ||||||||||  |||| ||||| |||||| ||||||||| |||||||||||||||||    
T  34012027 aatttttctacccacaccccatgtattttatgttacacctaaatttatttaaaattt 34012083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 635
Target Start/End: Original strand, 34012759 - 34012842
Alignment:
Q  552 aaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatccatactatattgcatata 635  Q
    |||||||||| |||||| |||| || || |||| ||||||| |||| ||||||||  |||| |||||||| | |||||||||||    
T  34012759 aaacaatcatagatgttcaatcaatctctataaaagattaaagagtgaatcaaaacatcttccatccatattctattgcatata 34012842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 660
Target Start/End: Original strand, 21203033 - 21203094
Alignment:
Q  599 aatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||||  ||||||||| ||||| ||||||||||| ||| |||||||||||  |||||||    
T  21203033 aatcaaaacatctttcatctatactctattgcatataagtaattgaatttcttattcttttt 21203094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 3112227 - 3112179
Alignment:
Q  422 tagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    ||||| || |||||||| || | ||||||||||||||||||||||||||    
T  3112227 tagtctcatcccatataattctagttacacccaaatttatttaaaattt 3112179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 21278463 - 21278527
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  21278463 attaaagagtgaatcaaaatatttttcatccatactcaattggatataagtaattgaatttcttc 21278527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Complemental strand, 25877428 - 25877364
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  25877428 attaaagagtgaatcaaaatatttttcatccatactcaattggatataagtaattgaatttcttc 25877364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 26015296 - 26015360
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| |||||||||||||||  |||| ||||| |||  |||||||||||    
T  26015296 attaaagagtgaatcaaaatatctttcatccatactcaattgaatataagtaagtgaatttcttc 26015360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 38283126 - 38283190
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  38283126 attaaagagtgaatcaaaatatttttcatccatactcaattggatataagtaattgaatttcttc 38283190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 46102679 - 46102635
Alignment:
Q  410 aatgaatttttctagtcacaacccatatattttttgttacaccca 454  Q
    |||||||||||||| ||||| || |||||||||| ||||||||||    
T  46102679 aatgaatttttctattcacatcctatatatttttggttacaccca 46102635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 1594 - 1375
Alignment:
Q  32 aaaaatcagagggtattggggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaaggtg 131  Q
    ||||||||||||||||||| |||| |||||||| ||| |  ||||||| ||||||||   |||  |||||||| |||||| | ||||||||  |||||||    
T  1594 aaaaatcagagggtattggtgaatcaaagagaagtaactcgcctaagttgttggtagtgcttacgatgaggtggtggcgctttgttgacaat-gaaggtg 1496  T
Q  132 cttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctc 231  Q
    ||| ||  |||||||  ||||||| ||||| ||  | |||| ||||||| |  ||||||| |||||||||||| || |||||||| |||||||| || ||    
T  1495 cttcttaccgaatttatgatcagaaattaacgatttgaaag-acttgcagacgcagcgaaattgaaggagtaatttcacgggaagtctacacaggatttc 1397  T
Q  232 agctacaagatcgaagggaaga 253  Q
     || |||||||| || ||||||    
T  1396 ggcaacaagatctaacggaaga 1375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 20305212 - 20305083
Alignment:
Q  115 gttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacggga 214  Q
    |||||||||||||||||||| || |||||||||||||| | ||||| || |||| ||||||||| ||||||| |||||||| | ||||||||| | ||||    
T  20305212 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagag-aattgaaggacttggaaagacaccgaagttgcaagagtaacttaatggga 20305114  T
Q  215 agcctacacagaatctcagctacaagatcga 245  Q
    || || || ||||| || || || |||||||    
T  20305113 agtctgcatagaatttctgcaaccagatcga 20305083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 20309616 - 20309487
Alignment:
Q  115 gttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacggga 214  Q
    |||||||||||||||||||| || |||||||||||||| | ||||| || |||| ||||||||| ||||||| |||||||| | ||||||||| | ||||    
T  20309616 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagag-aattgaaggacttggaaagacaccgaagttgcaagagtaacttaatggga 20309518  T
Q  215 agcctacacagaatctcagctacaagatcga 245  Q
    || || || ||||| || || || |||||||    
T  20309517 agtctgcatagaatttctgcaaccagatcga 20309487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 20292367 - 20292252
Alignment:
Q  100 aggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaagg 199  Q
    ||||| |||||| | |||||||||||||||||||| || |||||||||||||  | ||||| || |||| ||||||||| ||||||| |||||||| | |    
T  20292367 aggtggtggcgcgttgttgacaagcgaaggtgcttcttggcgaatttgggattggtgattagag-aattgaaggacttggaaagacaccgaagttgcaag 20292269  T
Q  200 agtaacttgacgggaag 216  Q
    |||||||| | ||||||    
T  20292268 agtaacttaatgggaag 20292252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 470
Target Start/End: Complemental strand, 8936038 - 8935986
Alignment:
Q  418 tttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    ||||||||| || |||||||| || | ||||||||||||||||||||||||||    
T  8936038 tttctagtctcatcccatataattctagttacacccaaatttatttaaaattt 8935986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 470
Target Start/End: Complemental strand, 25472441 - 25472389
Alignment:
Q  418 tttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    |||||| || || |||||||| |||| ||||||||||||||||||||||||||    
T  25472441 tttctaatctcaccccatatagttttagttacacccaaatttatttaaaattt 25472389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 459
Target Start/End: Original strand, 29385515 - 29385558
Alignment:
Q  416 tttttctagtcacaacccatatattttttgttacacccaaattt 459  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||    
T  29385515 tttttctattcacaccccatatattttttattacacccaaattt 29385558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 470
Target Start/End: Complemental strand, 8782832 - 8782783
Alignment:
Q  421 ctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    |||||| || |||||||| || | ||||||||||||||||||||||||||    
T  8782832 ctagtctcatcccatataattctagttacacccaaatttatttaaaattt 8782783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 12188497 - 12188542
Alignment:
Q  414 aatttttctagtcacaacccatatattttttgttacacccaaattt 459  Q
    |||||||||| ||||| |||||||||||||| ||||| ||||||||    
T  12188497 aatttttctattcacatcccatatattttttattacatccaaattt 12188542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 23764968 - 23765020
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaa 165  Q
    ||||||| ||||||| |||||| || ||||||||||||||||| |||| ||||    
T  23764968 tggttgagaagcgaaagtgcttcttggcgaatttgggatcagaaattagagaa 23765020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 23814816 - 23814868
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaa 165  Q
    ||||||| ||||||| |||||| || ||||||||||||||||| |||| ||||    
T  23814816 tggttgagaagcgaaagtgcttcttggcgaatttgggatcagaaattagagaa 23814868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 33037595 - 33037374
Alignment:
Q  33 aaaatcagagggtattggggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaaggtgc 132  Q
    |||||||||||| |||||||||| |||||||||||| |   ||||||||||  ||||  |||||||||| || |||||| || |||||| |||||| ||     
T  33037595 aaaatcagagggcattggggaatcaaagagaactaactcgtctaagtcgttattagagcttaacatgagatggtggcgcgtgtttgacatgcgaagatgt 33037496  T
Q  133 ttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctca 232  Q
    || || |||||||| |||||||| ||||| | |||| |  ||||| || ||||| |||||||||| ||| |  || || ||||| || || ||||| |||    
T  33037495 ttcttagcgaatttaggatcagaaattaacg-aattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttca 33037397  T
Q  233 gctacaagatcgaagggaagagt 255  Q
    || || ||||| || ||||||||    
T  33037396 gcgacgagatcaaacggaagagt 33037374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 43652901 - 43652958
Alignment:
Q  413 gaatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    ||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||    
T  43652901 gaatttttctagtcacaccccatatatttctggttatacccaaatttatttaaaattt 43652958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 33023665 - 33023515
Alignment:
Q  50 gggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttggg 149  Q
    |||||| | |||||||||| |  |||||||||||||||||  ||| ||| || || |||| | | ||||||| ||||| ||| || |||||||||  |||    
T  33023665 gggaatcatagagaactaactcccctaagtcgttggtagagcttaccataagatggtggctcatagttgacatgcgaaagtgtttctttgcgaatacggg 33023566  T
Q  150 atcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggag 201  Q
    |||| | ||||| ||| || |||||||||||||||||  |||||||||||||    
T  33023565 atcacacattaacgaa-ttgaaggacttgcaaagacattgaagttgaaggag 33023515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 673
Target Start/End: Original strand, 43653051 - 43653166
Alignment:
Q  556 aatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctc 655  Q
    |||||||||| || |||| || ||||| | ||||||| |||| ||| |||| |||||||||||||| | ||||||| |||||||  |||||||| ||  |    
T  43653051 aatcatggatattcaatcaatctcaatgaaagattaaagagtgaattaaaacgtctttcatccatagtctattgcaaataggtaagtgaatttcgtc--c 43653148  T
Q  656 ttttttcaatgaagttga 673  Q
    |||||||||||| |||||    
T  43653149 ttttttcaatgatgttga 43653166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 635
Target Start/End: Complemental strand, 35006429 - 35006308
Alignment:
Q  514 ttcattgtcactttaaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtcttt 613  Q
    |||||||||||| |||| |||||| |||||| | | | ||||||||||||||||| |||| || || |||  ||||| | |||| ||||||||  |||||    
T  35006429 ttcattgtcactctaaaatttcaccatctttcatccacaaacaatcatggatgttcaatcaatctctatagaagattgaagagtgaatcaaaacatcttt 35006330  T
Q  614 catccatactatattgcatata 635  Q
    |||| ||| |  ||||||||||    
T  35006329 catctatattcgattgcatata 35006308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 34059 - 33896
Alignment:
Q  92 ttaacatgaggtgatggcgcctggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaa 191  Q
    ||||||||||||| ||| || |||||||||   ||||||| || |||||||| |||||||| ||||| |||| ||| |||| |||| || || || || |    
T  34059 ttaacatgaggtggtggtgcttggttgacatatgaaggtgtttctttgcgaaattgggatctgagatcaaag-aatcaaagaacttacagaggcatcgga 33961  T
Q  192 gttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagagtt 256  Q
    |||| | |||||| ||||| ||||||||||| |||||||||| ||  ||||| || |||||||||    
T  33960 gttgtatgagtaatttgaccggaagcctacatagaatctcaggtatgagatcaaaaggaagagtt 33896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 556 - 652
Target Start/End: Original strand, 35979423 - 35979519
Alignment:
Q  556 aatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||||||||||| |||| || || | || ||||||| || | ||||||||| ||||||||||||||||| ||||||||| |||  |||||||||||    
T  35979423 aatcatggatgttcaatcaatctctaaaaaagattaaagactgaatcaaaatatctttcatccatactatgttgcatataagtaagtgaatttcttc 35979519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 649
Target Start/End: Original strand, 16584501 - 16584635
Alignment:
Q  514 ttcattgtcactttaaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtcttt 613  Q
    |||||||| | | ||||||||||| |||||| ||  | ||||| | |||||| || |||| |||||||||| | ||||| || |  ||||||| |||| |    
T  16584501 ttcattgtaagtctaaactttcaccatctttcacatacaaacatt-atggatattcaatcaatttcaataaaatattaaagaatggatcaaaacgtctat 16584599  T
Q  614 catccatactatattgcatataggtatttgaatttc 649  Q
    |||||||| | |||||||||||||||  ||||||||    
T  16584600 catccataatctattgcatataggtaagtgaatttc 16584635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 7988135 - 7988209
Alignment:
Q  586 agattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||| |||| ||||||||  ||||||||||||||| ||||||||||| | |  || |||||||| |||||||    
T  7988135 agattaaagagtgaatcaaaacttctttcatccatactttattgcatataagcaagtgtatttcttcttcttttt 7988209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 470
Target Start/End: Original strand, 5458238 - 5458287
Alignment:
Q  421 ctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    |||||| || |||||||| || | ||||||||||||||||||||||||||    
T  5458238 ctagtctcatcccatataattctagttacacccaaatttatttaaaattt 5458287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 3136692 - 3136756
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  3136692 attaaagagtgaatcaaaatatttttcatccatactcaattggatataagtaattgaatttcttc 3136756  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Complemental strand, 5988775 - 5988711
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  5988775 attaaagagtgaatcaaaatatttttcatccatactcaattggatataagtaattgaatttcttc 5988711  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 586 - 660
Target Start/End: Complemental strand, 15506480 - 15506406
Alignment:
Q  586 agattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttcctcttttt 660  Q
    ||||||| |||| ||||||||  |||||||| |||||| ||||||||||| ||| |||||||||||| |||||||    
T  15506480 agattaaagagtgaatcaaaacatctttcattcatactctattgcatataagtaattgaatttcttcttcttttt 15506406  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 660
Target Start/End: Complemental strand, 7818395 - 7818287
Alignment:
Q  552 aaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttctt 651  Q
    ||||||||||| ||||| | || ||||| |||| ||||||| |||| |||| |||  ||||||||| ||||| || |||||||| ||| ||||||||||     
T  7818395 aaacaatcatgaatgttcagtcaatttctataaaagattaaagagtgaatcgaaacatctttcatctatactctaatgcatataagtaattgaatttctc 7818296  T
Q  652 cctcttttt 660  Q
    | |||||||    
T  7818295 cttcttttt 7818287  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 652
Target Start/End: Original strand, 42130983 - 42131117
Alignment:
Q  518 ttgtcactttaaactttcactatcttttaccaaaaaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatc 617  Q
    |||| ||| |||| |||||  |||||| ||| | ||||||||| | |||||  ||| ||||| |||| ||||| | |||| ||||||||  ||||||||     
T  42130983 ttgttactctaaaatttcatcatctttcacctacaaacaatcacgaatgttctatcgatttctataagagatttaagagtaaatcaaaacatctttcatt 42131082  T
Q  618 catactatattgcatataggtatttgaatttcttc 652  Q
    |||||||||||  ||||| ||| ||||||||||||    
T  42131083 catactatattatatataagtaattgaatttcttc 42131117  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 7326555 - 7326499
Alignment:
Q  414 aatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    |||||||| | || || |||||||| |||| ||||||||||||||||||||||||||    
T  7326555 aatttttccaatctcaccccatataattttagttacacccaaatttatttaaaattt 7326499  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Complemental strand, 1537048 - 1536991
Alignment:
Q  413 gaatttttctagtcacaacccatatattttttgttacacccaaatttatttaaaattt 470  Q
    ||||| ||||| ||||||||||  ||||||| |||||||||||||||| | |||||||    
T  1537048 gaattcttctactcacaacccagttatttttagttacacccaaatttactaaaaattt 1536991  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Original strand, 10541579 - 10541643
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  10541579 attaaagagtgaatcaaaatatttttcatccatactcaattggatataagtaattgaatttcttc 10541643  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 11162696 - 11162740
Alignment:
Q  414 aatttttctagtcacaacccatatattttttgttacacccaaatt 458  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||    
T  11162696 aatttttttagtcacaccccatataattttggttacacccaaatt 11162740  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 22672850 - 22672902
Alignment:
Q  113 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaaagaa 165  Q
    ||||||||| || ||||||||| || ||||||||| |||||||||||| ||||    
T  22672850 tggttgacaggctaaggtgcttcttagcgaatttgcgatcagagattagagaa 22672902  T

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Target: scaffold0570 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 660
Target Start/End: Original strand, 3855 - 3963
Alignment:
Q  552 aaacaatcatggatgtttaatccatttcaataatagattaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttctt 651  Q
    ||||||| ||||||| | |||| || || |||  |||||||  ||| ||||||||| |||||| |||||||| |||||||||||  || |||||||||||    
T  3855 aaacaattatggatggtcaatcaatctctatagaagattaaaaagtgaatcaaaatatctttcgtccatactctattgcatataaataattgaatttctt 3954  T
Q  652 cctcttttt 660  Q
    | |||||||    
T  3955 cttcttttt 3963  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Complemental strand, 41152 - 41088
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| |||||||||||||||  |||| ||||| |||  |||||||||||    
T  41152 attaaagagtgaatcaaaatatctttcatccatactcaattggatataagtaagtgaatttcttc 41088  T

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Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 652
Target Start/End: Complemental strand, 40400649 - 40400585
Alignment:
Q  588 attaacgagttaatcaaaatgtctttcatccatactatattgcatataggtatttgaatttcttc 652  Q
    ||||| |||| ||||||||| | |||||||||||||  |||| ||||| ||| ||||||||||||    
T  40400649 attaaagagtgaatcaaaatatttttcatccatactcaattggatataagtaattgaatttcttc 40400585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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