View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18205_low_3 (Length: 655)
Name: NF18205_low_3
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18205_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 194 - 645
Target Start/End: Complemental strand, 22554465 - 22554032
Alignment:
| Q |
194 |
tctctttataacaagtcgggaactaatttgtcctcgagataaaattttcatgaacgaatttcggtattattttttgtaacgaactaaattgacatgcaag |
293 |
Q |
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| T |
22554465 |
tctctttataacaagttgggaactaatttgtcctcgagataaaattttcatgaacgaatttcggtattattttttgtaacaaactaaattgacatgcaag |
22554366 |
T |
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| Q |
294 |
aaaattgtgaaagaccagatagatgttgagttaaaattnnnnnnnnntagtagcaagttacatttgtcacgtaacgtgtgatgatctaagataaggtaaa |
393 |
Q |
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| T |
22554365 |
aaaattgtgaaagaccaga-----gtt----taaaa---------aatagtagcaagttacatttgtcacgtaacgtgtgatgatctaagataaggtaaa |
22554284 |
T |
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| Q |
394 |
gggataagaaaatctgaaagaaatgtgaaagtaaacataaactgcaacaaaaaccctactttagtgctacaccaacatcagaagcaacaaccataatcag |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22554283 |
gggataagaaaatctgaaagaaatgtgaaagtaaacataaactgcaacaaaaaccctactttagtgctacaccaacatgagaagcaacaaccataatcag |
22554184 |
T |
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| Q |
494 |
aaacaacaataaaaacatgctatttataatatagttgaactaaaatctttcattcttcactcacttcaaaacttcccttaataataacaacgatgttact |
593 |
Q |
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| T |
22554183 |
aaacaacaataaaaacatgctatttataatatagttgaactaaaatctttcattcttcactcacttcaaaacttcccttaataataacaacgatgttact |
22554084 |
T |
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| Q |
594 |
gtgtgaactactttgatgttaataatggctactactacacgtgttccctttg |
645 |
Q |
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| T |
22554083 |
gtgtgaactactttgatgttaattatggctactactacacgtgttccttttg |
22554032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 22554639 - 22554536
Alignment:
| Q |
20 |
tgagggatttaattatcctatttnnnnnnnctggaggccgaagtttatcgttgatcggtatatatttgaaaatttaatttgctcccgacaattttcttat |
119 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22554639 |
tgagggatttaattatcctatttaaaaaaactagaggccgaagtttatcgttgatcggtatatatttgaaaattcaatttgctcccgacaattttcttat |
22554540 |
T |
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| Q |
120 |
gctc |
123 |
Q |
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|||| |
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| T |
22554539 |
gctc |
22554536 |
T |
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