View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18205_low_5 (Length: 600)
Name: NF18205_low_5
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18205_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 117 - 586
Target Start/End: Original strand, 1711291 - 1711747
Alignment:
| Q |
117 |
gggggagactaggtctgaccctcaaagcaaaagaaaagaaaacataacaagaaaatctaaggaagacgatacgtctgcaattcaaaatggtccctaaaaa |
216 |
Q |
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| T |
1711291 |
gggggagactaggtctgaccctcaaagcaaaagaaaagaaaac-------------ctaaggaagacgatacgtctgcaatccaaaatggtccctaaaaa |
1711377 |
T |
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| Q |
217 |
aggcatccctgagaaaattgggtaagttagtggaccaccaagaaccctgaatagagagatcatagttagcaagcttgcctgcgcacccattgtcttcaca |
316 |
Q |
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| T |
1711378 |
aggcatccctaagaaaattgggtaagttagttgaccaccaagaaccttgaatagagtgaccatagttagcaagcttgtctgcgcacctattgtcttcaca |
1711477 |
T |
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| Q |
317 |
aaaa-tatgcgatgaaatgacctgaacatcagagtgagacaattaattatgttatctgtttcggagacnnnnnnnnataattgaattaatatatgatata |
415 |
Q |
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| T |
1711478 |
aaaaatatgcgatgaaatgacctgaacatcagagtgagacaattaattatgttatccgttttggagactttttta-ataattgaattaatatatgatata |
1711576 |
T |
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| Q |
416 |
tttctccactacatattcttaattaataaatttccatttaccaactcaagtttatatttgattttactaactcatgtatgatcaagcaaaagtgctagga |
515 |
Q |
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| T |
1711577 |
tttctccactacatattcttaattaataaatttccatttaccaactcaagtttatatttgattttactaactcatgtatgatcaagcaaaagtgctagga |
1711676 |
T |
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| Q |
516 |
actgtgaactttattatgttggagatgtaattatatcggatttggactttatttgctttggtagttacttt |
586 |
Q |
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| T |
1711677 |
actgtgaactttattatgttggagatgtaattatatcggatttggactttatttgctttggtagttacttt |
1711747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 1711185 - 1711245
Alignment:
| Q |
11 |
cacagacatcccaactaggttggtatctttgaggaacttttatcctctgccgccaacctca |
71 |
Q |
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| T |
1711185 |
cacagacatcctaactaggttggcatctttgaggaacttttatcctctgccgccaacctca |
1711245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 19424960 - 19425067
Alignment:
| Q |
165 |
aagaaaatctaaggaagacgatacgtctgcaattcaaaatggtccctaaaaaaggcatccctgagaaaattgggtaagttagtggaccaccaagaaccct |
264 |
Q |
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| T |
19424960 |
aagaaaagctaaggaaaacgatacatgggcaatccaaaacggtccctaaaaaagtcctccctaaggaaatcaggtaagctagttgaccaccaagaatcct |
19425059 |
T |
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| Q |
265 |
gaatagag |
272 |
Q |
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||| |||| |
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| T |
19425060 |
gaacagag |
19425067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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