View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18205_low_8 (Length: 497)
Name: NF18205_low_8
Description: NF18205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18205_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 2188346 - 2188795
Alignment:
| Q |
16 |
atgaggtagtttatagtttacctaaggtggccacatcttcaaatattggtagaaatattaaattgcattgaataaattatcattaatgaaatgttataag |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188346 |
atgaggtagtttatagtttatctaaggtggccacatcttcaaacattggtagaaataccaaattgcattgaataaattatcattaatgaaatgttataag |
2188445 |
T |
|
| Q |
116 |
tttctaccttnnnnnnnntagtgttaaatgagtgtttgagaattatagatgttcaaatataagggttgtttatttaataaacaatgaaggtttttgcttt |
215 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188446 |
tttctaacttaaaaaaaataatgttaaatgagtgtttgagaattatagatgttgaaatataagggttgtttatttaataaacaatgaaggtttttgcttt |
2188545 |
T |
|
| Q |
216 |
gtgagaaaatagaaggacatgaattacatttgtaagggtggtaggcatatttttctttatttttaatgatgtgatttttaaaattattacaaaaacaatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188546 |
gtgagaaaatagaaggacatgaattacatttgtaagggtggtaggcatatttttctttatttttaatgatgtgatttttaaaattattacaaaaacaatt |
2188645 |
T |
|
| Q |
316 |
gcaaataggatcaaactagtcctctccgactaattagcgagttccaaagcgcttttgttcttggaagatcgatttctgagaatactcttctagcttttga |
415 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2188646 |
gcaaataggatcaaactggtcctctccgactaattagcgagttccaaagcgcttttgttcttggaagatcgatttctgagaatgctcttctagcttttga |
2188745 |
T |
|
| Q |
416 |
atatttccattacatgagaaaaaagaagggtacaaaggggtgtggtgtgg |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188746 |
atatttccattacatgagaaaaaagaagggtacaaaggggtgtggtgtgg |
2188795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 3147729 - 3147688
Alignment:
| Q |
142 |
aatgagtgtttgagaattatagatgttcaaatataagggttg |
183 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
3147729 |
aatgagtgtttgagaattatggatgtgcgaatataagggttg |
3147688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 15634278 - 15634329
Alignment:
| Q |
136 |
gtgttaaatgagtgtttgagaattatagatgttcaaatataagggttgttta |
187 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
15634278 |
gtgttgaatgagtgtttgagaataattgatgttcaaatataagggtggttta |
15634329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 43136625 - 43136592
Alignment:
| Q |
290 |
tttttaaaattattacaaaaacaattgcaaatag |
323 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
43136625 |
tttttaaaattattactaaaacaattgcaaatag |
43136592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 14071760 - 14071720
Alignment:
| Q |
284 |
atgtgatttttaaaattattacaaaaacaattgcaaatagg |
324 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
14071760 |
atgtcatttttaaaataattacaaaaacaatttcaaatagg |
14071720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 14381788 - 14381748
Alignment:
| Q |
284 |
atgtgatttttaaaattattacaaaaacaattgcaaatagg |
324 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
14381788 |
atgtcatttttaaaataattacaaaaacaatttcaaatagg |
14381748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 18481985 - 18481938
Alignment:
| Q |
135 |
agtgttaaatgagtgtttgagaattatagatgttcaaatataagggtt |
182 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
18481985 |
agtgttgaatgagtgtttgagaattataggtgtctaaatataagggtt |
18481938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 11599149 - 11599183
Alignment:
| Q |
290 |
tttttaaaattattacaaaaacaattgcaaatagg |
324 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
11599149 |
tttttaaaataattacaaaaacaattgcaaatagg |
11599183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University