View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18206_high_2 (Length: 260)

Name: NF18206_high_2
Description: NF18206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18206_high_2
NF18206_high_2
[»] chr5 (12 HSPs)
chr5 (17-245)||(10218126-10218355)
chr5 (48-246)||(10603352-10603551)
chr5 (37-188)||(10664558-10664710)
chr5 (22-174)||(10661470-10661623)
chr5 (126-198)||(10764622-10764694)
chr5 (22-93)||(10653584-10653655)
chr5 (45-246)||(10599687-10599889)
chr5 (45-190)||(10610365-10610511)
chr5 (45-196)||(10748423-10748575)
chr5 (37-175)||(7191675-7191814)
chr5 (46-176)||(10557589-10557720)
chr5 (51-171)||(10549467-10549588)
[»] chr6 (4 HSPs)
chr6 (35-93)||(12956834-12956892)
chr6 (37-195)||(12905840-12905999)
chr6 (38-176)||(12930948-12931087)
chr6 (38-73)||(12947417-12947452)
[»] chr2 (2 HSPs)
chr2 (126-195)||(17924893-17924962)
chr2 (37-93)||(17924803-17924859)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 10218126 - 10218355
Alignment:
Q  17 atactcaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaac 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218126 atacccaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaac 10218225  T
Q  117 ttagtataatt-gtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagcc 215  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  10218226 ttagtacaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaatagtagatcatttagcc 10218325  T
Q  216 atcctagagttggaacttgtccaacaaaat 245  Q
    ||||||||||||||||||||||||||||||    
T  10218326 atcctagagttggaacttgtccaacaaaat 10218355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 10603551 - 10603352
Alignment:
Q  48 gataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaact 146  Q
    |||||||| |||||  ||||| ||||  | ||||||||||| |||||| ||| ||| ||   |||||||||| || | || ||||| |||||||||||||    
T  10603551 gataaatttcctatagaattttgcaaactacctccaaaattattattggttaaagatagtgattgcaacttactacagtttgtcaatgattttaaaaact 10603452  T
Q  147 ccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaaatg 246  Q
    |||||||  ||||||| ||||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| ||||||||||||||||||||||    
T  10603451 ccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaaatg 10603352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 10664558 - 10664710
Alignment:
Q  37 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 135  Q
    |||||| | ||||||||||||||| |||||||| ||| ||| |||||||||| ||||||  |||||||| |||||| |   || || |||| ||||| ||    
T  10664558 taagttgattggataaattgcctacgaaatttgtcaatttggctccaaaattattattgcatatagaaatcacttgtagtctactacaattcgtcaagga 10664657  T
Q  136 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattcca 188  Q
     ||||| |||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  10664658 ctttaagaactccaaatccttagttgagttgtcacctaaactgttgaattcca 10664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 10661470 - 10661623
Alignment:
Q  22 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagt 121  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| || |||||||  ||| ||  |||||||| ||||   |  |||||    
T  10661470 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacccccaaaatgattactggatatagaaatcactcttagtttagt 10661569  T
Q  122 -ataattgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaa 174  Q
     |   ||||||| | ||| ||||||||||||||||| |||||||||||||||||    
T  10661570 gaagtttgtcaaggttttcaaaaactccaaatccttagttgaattgtcacctaa 10661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 10764622 - 10764694
Alignment:
Q  126 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaa 198  Q
    |||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | |||||||||||||||    
T  10764622 ttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 10764694  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 10653584 - 10653655
Alignment:
Q  22 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 93  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| ||||||||||| ||||    
T  10653584 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacctccaaaattattat 10653655  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 10599889 - 10599687
Alignment:
Q  45 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 143  Q
    ||||||||||| || ||  ||||| ||||  | ||||||||||| |||| | ||| ||| |||  |||||||||| || | || ||||| || || ||||    
T  10599889 gtggataaatttccaatagaattttgcaaactacctccaaaattattataggttaaagatagcgattgcaacttactacagtttgtcaatgacttcaaaa 10599790  T
Q  144 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 243  Q
    ||| ||||||| |||||||  |||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||    
T  10599789 actgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaa 10599690  T
Q  244 atg 246  Q
    |||    
T  10599689 atg 10599687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 10610511 - 10610365
Alignment:
Q  45 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 143  Q
    |||||||||||||| ||||||||||||||  | |||||||| || |||||   ||||||||||  ||  |  ||| || | || |||||| |||||||||    
T  10610511 gtggataaattgccaatgaaatttggcaaactacctccaaacttattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaa 10610412  T
Q  144 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaa 190  Q
    |||| |||||  | |||||||||| ||| ||||||||||||||||||    
T  10610411 actctaaatctatagttgaattgttaccgaaatagttgtattccaaa 10610365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 10748423 - 10748575
Alignment:
Q  45 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 143  Q
    ||||||||| |||| ||| ||||||||||  | |||||||| || |||||   |||||||| |||||  |  ||| || |||| |||||| | |||||||    
T  10748423 gtggataaactgccaatggaatttggcaaactacctccaaacttattattacatatagaaaccacttctagtttactacaatttgtcaaatactttaaaa 10748522  T
Q  144 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagc 196  Q
    |||| |||||  | |||||||||| ||| |||||||||| |||||||||||||    
T  10748523 actctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagc 10748575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 7191814 - 7191675
Alignment:
Q  37 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 135  Q
    |||||| |||||||||||| || ||| |||||||||| || ||||||||||| |||  |  |||||||| |||| | |  ||| || | || ||||| ||    
T  7191814 taagttgagtggataaattcccaatggaatttggcaaattacctccaaaattattaaaggatatagaaaacactagtagtttactacagtttgtcaagga 7191715  T
Q  136 ttttaaaaactccaaatcctttgttgaattgtcacctaaa 175  Q
    |||||||||||| |||||||| || ||||||| |||||||    
T  7191714 ttttaaaaactctaaatccttagtggaattgttacctaaa 7191675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 10557720 - 10557589
Alignment:
Q  46 tggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaa 144  Q
    ||||||||||||||   |||||||||||  | ||||||||||| |||| |  |||||||  ||||||||||||| || | || ||||| |||||||||||    
T  10557720 tggataaattgcctgccaaatttggcaaactacctccaaaattattatgggatatagaacacacttgcaacttactacagttagtcaatgattttaaaaa 10557621  T
Q  145 ctccaaatcctttgttgaattgtcacctaaat 176  Q
       ||||||||| |||||||| ||||| ||||    
T  10557620 aatcaaatccttagttgaattttcaccaaaat 10557589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 10549588 - 10549467
Alignment:
Q  51 aaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaactcca 149  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||| |  ||||||||   ||||||| ||| || |||| ||||| | ||||||||| || |    
T  10549588 aaattacctatgaaacttggcaaactacctccaaaattattatgggatatagaaaatgcttgcaaattactacaatttgtcaatggttttaaaaattcta 10549489  T
Q  150 aatcctttgttgaattgtcacc 171  Q
    ||||||| ||||||||||||||    
T  10549488 aatccttagttgaattgtcacc 10549467  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 12956892 - 12956834
Alignment:
Q  35 aataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 93  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| ||||    
T  12956892 aataagttcagtggataaattccctatggaatttggcaaatggcctccaaaattattat 12956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 12905999 - 12905840
Alignment:
Q  37 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 135  Q
    ||||||||||||| || ||||||||| |||||||||| |  ||||||||||| |||   | ||| |||||||| |  |  ||| |  |||| |||||| |    
T  12905999 taagttcagtggaaaagttgcctatggaatttggcaaatgtcctccaaaattattagaatctattgaaagcacgtatagtttactgcaatttgtcaaata 12905900  T
Q  136 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 195  Q
    |||||||||||| |||||||| |||||| ||| |||||||| |||| || ||||| ||||    
T  12905899 ttttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttag 12905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 12931087 - 12930948
Alignment:
Q  38 aagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataa-ttgtcaaagat 136  Q
    ||||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||||    ||| |||||||| |  |  ||| |  || |||||||| ||    
T  12931087 aagttcagtcgataaattgcctatggaatttggcaaatgacctccaaaattattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatat 12930988  T
Q  137 tttaaaaactccaaatcctttgttgaattgtcacctaaat 176  Q
    ||||||||||| |||||| | |||||||||| ||||||||    
T  12930987 tttaaaaactctaaatccatagttgaattgttacctaaat 12930948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 12947452 - 12947417
Alignment:
Q  38 aagttcagtggataaattgcctatgaaatttggcaa 73  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12947452 aagttcagtggataaattgcctatggaatttggcaa 12947417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 17924893 - 17924962
Alignment:
Q  126 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 195  Q
    |||||||| ||||||||||||| |||||| | |||||||| |||||||||| ||| | ||||||||||||    
T  17924893 ttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag 17924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 17924803 - 17924859
Alignment:
Q  37 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 93  Q
    ||||||||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    
T  17924803 taagttcagtggataaattccctatggaatttggcaaatgacctccaaaattattat 17924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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