View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18206_low_5 (Length: 249)
Name: NF18206_low_5
Description: NF18206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18206_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 26275380 - 26275162
Alignment:
| Q |
18 |
caatatggtcgacattttctacctggtgtaagatttcatgttagttagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtttggg |
117 |
Q |
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| T |
26275380 |
caatatggtcgacattttctacctggtgtaatatttcatgttaggtagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtttgat |
26275281 |
T |
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| Q |
118 |
cttcatattcacatcctcgacaatttgtcagtcacaagtaaccttaaacaaccttttgtttattactcagctgccacttggctgagttctttatatttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275280 |
cttcatattcacatcctcgacaatttgtcagtcacaagtaaccttaaacaaccttttgtttattactcagctgccacttggctgagttctttatatttat |
26275181 |
T |
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| Q |
218 |
tttcccacttgtttcttctc |
237 |
Q |
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||| |||||||||||||||| |
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| T |
26275180 |
ttt-ccacttgtttcttctc |
26275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 26250817 - 26250885
Alignment:
| Q |
45 |
gtaagatttcatgttagttagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtt |
113 |
Q |
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||||||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||| |
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| T |
26250817 |
gtaagatttcatgttaggtagtttctaccacctgcaataccaactttctcacctttcccatcttcagtt |
26250885 |
T |
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