View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18207_high_10 (Length: 357)
Name: NF18207_high_10
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 11476446 - 11476121
Alignment:
| Q |
13 |
ctgagaagaaagctatgtggaaaagagaaatgaattgtcttatgtctgtgtgtgattacatagtagagtttgcaccaactgcacaatatttggatgatgg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11476446 |
ctgagaagaaagctatgtggaaaagagaaatgaattgtcttatgtctgtgtgtgattacatagtagaatttgcaccaactgcacaatacttggatgatgg |
11476347 |
T |
|
| Q |
113 |
tacaattgtggaggtaaactattgctacaccttaattaggcttagtgtgtattttaaatagcgatctttttaaatactggtgctaagttacactgatata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11476346 |
tacaattgtggaggtaaactattgctacaccttaattaggcttagtgtgtattttaaatagcgatctttttaaataccggtgctaagttacactgatata |
11476247 |
T |
|
| Q |
213 |
gccgctatttaacaatactttatactaatatctcataatgtgtcgtatataatatctgatgatatctttcagatgatgacaagtagaccaagggcagata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11476246 |
gccgctatttaacaatactttatactaatatctcataatgtgtcgtatataatatctgatgatatctttcagatgatgacaagtagaccaagggcagata |
11476147 |
T |
|
| Q |
313 |
tttatgtaaaccttccaggtctacag |
338 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
11476146 |
tttatataaaccttccagctctacag |
11476121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 29298651 - 29298765
Alignment:
| Q |
13 |
ctgagaagaaagctatgtggaaaagagaaatgaattgtcttatgtctgtgtgtgattacatagtagagtttgcaccaactgcacaatatttggatgatgg |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||| ||| ||||| ||||||||||||||||| || ||||| |
|
|
| T |
29298651 |
ctgagaagaaaatcatgtggaaaagagaaatgaaagttcttctatctgtgtgtgattacatacaagaatttgccccaactgcacaatatttagaagatgg |
29298750 |
T |
|
| Q |
113 |
tacaattgtggaggt |
127 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29298751 |
cacaattgtggaggt |
29298765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University