View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_high_12 (Length: 297)
Name: NF18207_high_12
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_high_12 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0246 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 20184 - 19904
Alignment:
| Q |
1 |
aactcggtcaagccttcattgctcttgcaacactcattcctgacctaaagaaggtaagaagtaaatgttagtagataactctagatctagtttcaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20184 |
aactcggtcaagccttcattgctcttgcaacactcattcctgacctaaagaaggtaagaagtaaatgttagtagataactctagatctagtttcaaaaca |
20085 |
T |
|
| Q |
101 |
agtcacttcgttgattgttgcacagatgctaatacacatatttaacttatatctttaactatgtattagcaaaacttcctgaaattaactctcttttttg |
200 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20084 |
agtcacctcgttgattgttgcacacatgctaatacacatatttaacttatatctttaactatgtattagcaaaacttcctgaaattaactctcttttttg |
19985 |
T |
|
| Q |
201 |
aaaatatttgtcgaaacttataaaacttatatgctacaatttgtttttatataataataaaagaaatatgatcaaagtatct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
19984 |
aaaatatttgtcgaaacttataaaacttatatgctacaatttgtttttatataatagtaaaag-aatatgatcaaagtatct |
19904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 40482245 - 40481965
Alignment:
| Q |
1 |
aactcggtcaagccttcattgctcttgcaacactcattcctgacctaaagaaggtaagaagtaaatgttagtagataactctagatctagtttcaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40482245 |
aactcggtcaagccttcattgctcttgcaacactcattcctgacctaaagaaggtaagaagtaaatgttagtagataactctagatctagtttcaaaaca |
40482146 |
T |
|
| Q |
101 |
agtcacttcgttgattgttgcacagatgctaatacacatatttaacttatatctttaactatgtattagcaaaacttcctgaaattaactctcttttttg |
200 |
Q |
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| T |
40482145 |
agtcacctcgttgattgttgcacacatgctaatacacatatttaacttatatctttaactatgtattagcaaaacttcctgaaattaactctcttttttg |
40482046 |
T |
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| Q |
201 |
aaaatatttgtcgaaacttataaaacttatatgctacaatttgtttttatataataataaaagaaatatgatcaaagtatct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
40482045 |
aaaatatttgtcgaaacttataaaacttatatgctacaatttgtttttatataatagtaaaag-aatatgatcaaagtatct |
40481965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 24727947 - 24727992
Alignment:
| Q |
228 |
tatatgctacaatttgtttttatataataataaaagaaatatgatc |
273 |
Q |
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| T |
24727947 |
tatatgctactatttgtctttatataatagtaaaaaaaatatgatc |
24727992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 33821407 - 33821379
Alignment:
| Q |
229 |
atatgctacaatttgtttttatataataa |
257 |
Q |
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| T |
33821407 |
atatgctacaatttgtttttatataataa |
33821379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 3382917 - 3382952
Alignment:
| Q |
244 |
tttttatataataataaaagaaatatgatcaaagtat |
280 |
Q |
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| T |
3382917 |
tttttatataataataaaa-aaatatgatcaaagtat |
3382952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 26796505 - 26796556
Alignment:
| Q |
224 |
aacttatatgctacaatttgtttttatataataataaaagaaatatgatcaaa |
276 |
Q |
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|||||||||||||| |||||||||||||| ||||| || ||||||||||||| |
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| T |
26796505 |
aacttatatgctaccttttgtttttatatattaatagaa-aaatatgatcaaa |
26796556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 37401119 - 37401083
Alignment:
| Q |
226 |
cttatatgctacaatttgtttttatataataataaaa |
262 |
Q |
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||||||||||||||||| ||||||||||||| ||||| |
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| T |
37401119 |
cttatatgctacaatttatttttatataatagtaaaa |
37401083 |
T |
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