View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_high_13 (Length: 294)
Name: NF18207_high_13
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 46789218 - 46789482
Alignment:
| Q |
13 |
aaaatatcgatacaaagagcttgaagaagcaacggataattttcaagctatcatcggtaaagggtcatcagcttcagttttcaaaggcattttgaatgat |
112 |
Q |
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| T |
46789218 |
aaaatatcgatacaaagaacttgaagaagcaacggataattttcaagctatcatcggtaaagggtcatcagcttcagttttcaaaggcattttgaatgat |
46789317 |
T |
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| Q |
113 |
ggaacttcagttgctgtgaaaagaattcatggtgaagaaagaggtgaaagagaatttagatcagaagtttcagctatagctagtgttcaacatgttaatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46789318 |
ggaacttcagttgctgtgaaaagaattcatggtgaagaaagaggtgaaagagaatttagatcagaagtttcagctatagctagtgttcaacatgttaatc |
46789417 |
T |
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| Q |
213 |
ttgtgagactttttggttattgtaattctccaacaccacctaggtatcttgtttatgagtttatt |
277 |
Q |
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| T |
46789418 |
ttgtgagactttttggttattgtaattctccaacaccacctaggtatcttgtttatgagtttatt |
46789482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 83 - 270
Target Start/End: Complemental strand, 23467122 - 23466935
Alignment:
| Q |
83 |
gcttcagttttcaaaggcattttgaatgatggaacttcagttgctgtgaaaagaattcatggtgaagaaagaggtgaaagagaatttagatcagaagttt |
182 |
Q |
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||||| ||||||||||| ||| | |||||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||||||||| |||||||||| |
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| T |
23467122 |
gcttcggttttcaaaggaattctcaatgatggaacttcggttgctgtgaaaagaattgatgcagaagaaagaggagcaagagaatttaaatcagaagttg |
23467023 |
T |
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| Q |
183 |
cagctatagctagtgttcaacatgttaatcttgtgagactttttggttattgtaattctccaacaccacctaggtatcttgtttatga |
270 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||||||||| |||||||||||| | || | |||||||| ||||||||||| |
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| T |
23467022 |
cagctatagctaatgttcatcatgtgaatcttgtgagactttttgggtattgtaattcttcttcagctcctaggtaccttgtttatga |
23466935 |
T |
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