View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18207_high_2 (Length: 611)

Name: NF18207_high_2
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18207_high_2
NF18207_high_2
[»] chr3 (43 HSPs)
chr3 (224-525)||(28904916-28905217)
chr3 (14-165)||(28904711-28904857)
chr3 (298-408)||(54484737-54484848)
chr3 (249-392)||(29366736-29366881)
chr3 (239-408)||(40272812-40272982)
chr3 (239-406)||(26573115-26573282)
chr3 (239-408)||(34420643-34420813)
chr3 (239-389)||(46421054-46421207)
chr3 (239-408)||(13730602-13730774)
chr3 (249-373)||(22122952-22123074)
chr3 (239-407)||(22609754-22609921)
chr3 (241-408)||(26869696-26869863)
chr3 (252-408)||(13628790-13628948)
chr3 (81-133)||(28927692-28927744)
chr3 (239-408)||(53996565-53996735)
chr3 (239-392)||(7696908-7697055)
chr3 (554-596)||(28905246-28905288)
chr3 (250-409)||(39203515-39203672)
chr3 (239-389)||(8247706-8247859)
chr3 (245-388)||(30928167-30928310)
chr3 (239-347)||(45620890-45620998)
chr3 (239-408)||(1217077-1217245)
chr3 (304-389)||(9276317-9276401)
chr3 (298-392)||(6411838-6411931)
chr3 (239-373)||(12914070-12914205)
chr3 (298-409)||(45786213-45786326)
chr3 (318-408)||(15797286-15797377)
chr3 (318-408)||(34771364-34771455)
chr3 (232-269)||(829581-829618)
chr3 (304-408)||(25517170-25517275)
chr3 (351-408)||(50624953-50625010)
chr3 (239-408)||(25944457-25944627)
chr3 (298-372)||(47624089-47624162)
chr3 (239-275)||(55400986-55401022)
chr3 (239-376)||(44403587-44403725)
chr3 (239-316)||(10870043-10870121)
chr3 (239-293)||(53062026-53062080)
chr3 (298-408)||(31592896-31593004)
chr3 (304-349)||(33235584-33235629)
chr3 (324-408)||(52926219-52926304)
chr3 (352-408)||(516513-516569)
chr3 (298-409)||(10795422-10795535)
chr3 (239-271)||(35417904-35417936)
[»] chr1 (48 HSPs)
chr1 (249-408)||(46247953-46248112)
chr1 (239-371)||(18724582-18724714)
chr1 (249-371)||(41319843-41319965)
chr1 (249-405)||(46991803-46991959)
chr1 (239-392)||(14617026-14617180)
chr1 (239-408)||(18944631-18944804)
chr1 (246-377)||(35117797-35117930)
chr1 (239-408)||(34725098-34725266)
chr1 (249-392)||(23768336-23768479)
chr1 (249-392)||(27474280-27474422)
chr1 (318-409)||(4349705-4349797)
chr1 (253-408)||(8197046-8197201)
chr1 (239-392)||(19701559-19701713)
chr1 (239-408)||(6983811-6983978)
chr1 (306-408)||(20999850-20999952)
chr1 (239-392)||(30395742-30395898)
chr1 (238-373)||(47214498-47214632)
chr1 (239-405)||(52910206-52910379)
chr1 (239-376)||(20036209-20036347)
chr1 (239-337)||(22327088-22327185)
chr1 (239-373)||(32632592-32632726)
chr1 (249-349)||(4430086-4430185)
chr1 (239-408)||(10668208-10668385)
chr1 (249-408)||(20004090-20004251)
chr1 (249-392)||(27201646-27201791)
chr1 (298-408)||(35005171-35005283)
chr1 (239-316)||(45812627-45812705)
chr1 (351-392)||(42304223-42304264)
chr1 (239-376)||(18741989-18742131)
chr1 (239-279)||(28894660-28894700)
chr1 (298-408)||(31382214-31382323)
chr1 (239-408)||(50811928-50812098)
chr1 (232-271)||(34679356-34679395)
chr1 (250-373)||(12126872-12126993)
chr1 (323-376)||(15505636-15505690)
chr1 (307-376)||(19932785-19932856)
chr1 (239-293)||(25554837-25554891)
chr1 (304-376)||(30682868-30682938)
chr1 (239-269)||(31442516-31442546)
chr1 (298-373)||(35253222-35253295)
chr1 (239-348)||(2435848-2435956)
chr1 (249-318)||(14988009-14988078)
chr1 (239-373)||(22930104-22930237)
chr1 (250-408)||(38478282-38478438)
chr1 (351-408)||(50606504-50606561)
chr1 (318-405)||(10378738-10378826)
chr1 (239-271)||(43207478-43207510)
chr1 (334-405)||(45402179-45402251)
[»] chr7 (32 HSPs)
chr7 (239-409)||(23419673-23419843)
chr7 (239-408)||(32758226-32758394)
chr7 (241-407)||(11617589-11617756)
chr7 (239-408)||(42798634-42798804)
chr7 (239-376)||(35334848-35334984)
chr7 (298-408)||(7879663-7879773)
chr7 (239-409)||(2541018-2541190)
chr7 (239-408)||(21172009-21172177)
chr7 (249-408)||(42805500-42805661)
chr7 (239-376)||(19266416-19266553)
chr7 (239-388)||(28362165-28362314)
chr7 (304-376)||(1408488-1408560)
chr7 (239-408)||(19265781-19265948)
chr7 (239-409)||(48735121-48735291)
chr7 (250-373)||(10693108-10693229)
chr7 (249-372)||(33871946-33872068)
chr7 (249-363)||(42476849-42476961)
chr7 (239-373)||(19426925-19427059)
chr7 (255-408)||(42391100-42391251)
chr7 (239-318)||(47077943-47078023)
chr7 (249-408)||(34626208-34626366)
chr7 (239-271)||(3469316-3469348)
chr7 (239-373)||(27629599-27629734)
chr7 (239-376)||(40463842-40463979)
chr7 (239-376)||(13805068-13805204)
chr7 (239-361)||(48123531-48123653)
chr7 (298-407)||(18747511-18747621)
chr7 (239-279)||(14732951-14732992)
chr7 (298-381)||(15108424-15108506)
chr7 (304-376)||(23231588-23231660)
chr7 (298-389)||(38604552-38604642)
chr7 (249-408)||(43557448-43557610)
[»] chr4 (46 HSPs)
chr4 (233-378)||(47441560-47441705)
chr4 (238-408)||(11054148-11054317)
chr4 (249-408)||(47528530-47528687)
chr4 (249-376)||(40915805-40915931)
chr4 (239-376)||(5648224-5648361)
chr4 (239-407)||(6430627-6430795)
chr4 (239-381)||(5306691-5306833)
chr4 (244-408)||(35567141-35567305)
chr4 (232-373)||(17043429-17043567)
chr4 (239-392)||(30639345-30639498)
chr4 (239-408)||(16408601-16408773)
chr4 (239-408)||(16911527-16911699)
chr4 (298-408)||(25629074-25629184)
chr4 (239-369)||(48598864-48598993)
chr4 (239-408)||(20224949-20225117)
chr4 (298-408)||(20639658-20639769)
chr4 (249-409)||(44363129-44363291)
chr4 (298-408)||(51865038-51865148)
chr4 (238-392)||(54730213-54730371)
chr4 (351-408)||(33836487-33836544)
chr4 (239-408)||(23501758-23501924)
chr4 (239-392)||(30581481-30581636)
chr4 (239-291)||(54966987-54967039)
chr4 (351-409)||(30690175-30690233)
chr4 (351-409)||(38755907-38755965)
chr4 (298-408)||(9832313-9832421)
chr4 (232-392)||(19027807-19027967)
chr4 (239-392)||(20908652-20908807)
chr4 (239-348)||(25343153-25343261)
chr4 (351-408)||(47482850-47482907)
chr4 (298-376)||(7909313-7909390)
chr4 (239-405)||(21646929-21647098)
chr4 (298-373)||(47443982-47444057)
chr4 (351-394)||(14983912-14983955)
chr4 (354-409)||(40553936-40553991)
chr4 (298-408)||(54175089-54175200)
chr4 (351-409)||(11394930-11394988)
chr4 (351-409)||(11404657-11404715)
chr4 (244-290)||(35894572-35894618)
chr4 (304-388)||(3580860-3580944)
chr4 (318-406)||(29207900-29207989)
chr4 (351-408)||(32484311-32484368)
chr4 (240-316)||(49938682-49938759)
chr4 (239-271)||(487272-487304)
chr4 (239-271)||(42164285-42164317)
chr4 (298-376)||(49796823-49796900)
[»] chr2 (31 HSPs)
chr2 (239-405)||(4516354-4516520)
chr2 (249-408)||(24200623-24200784)
chr2 (239-408)||(8455316-8455486)
chr2 (239-408)||(10543663-10543835)
chr2 (239-376)||(12023951-12024088)
chr2 (239-409)||(14530283-14530456)
chr2 (239-408)||(9671145-9671314)
chr2 (304-408)||(10546193-10546298)
chr2 (298-392)||(14444754-14444847)
chr2 (239-392)||(11514401-11514554)
chr2 (239-376)||(25079749-25079888)
chr2 (239-388)||(21377093-21377242)
chr2 (304-392)||(17896290-17896379)
chr2 (239-408)||(21779261-21779429)
chr2 (298-408)||(40762234-40762344)
chr2 (229-271)||(35017773-35017815)
chr2 (251-371)||(5450263-5450384)
chr2 (304-372)||(32781324-32781392)
chr2 (351-408)||(34766333-34766390)
chr2 (304-408)||(39914306-39914410)
chr2 (353-409)||(8575975-8576031)
chr2 (239-408)||(27573586-27573755)
chr2 (298-408)||(36871518-36871626)
chr2 (249-409)||(23397742-23397900)
chr2 (351-394)||(24059010-24059053)
chr2 (307-376)||(24890444-24890514)
chr2 (249-389)||(26684639-26684781)
chr2 (239-408)||(44643488-44643658)
chr2 (323-407)||(13245096-13245181)
chr2 (239-276)||(35010513-35010550)
chr2 (351-407)||(40579750-40579806)
[»] chr8 (30 HSPs)
chr8 (249-408)||(28817626-28817785)
chr8 (239-408)||(35261644-35261814)
chr8 (239-408)||(30454097-30454265)
chr8 (249-376)||(36720772-36720899)
chr8 (250-388)||(24365079-24365218)
chr8 (239-408)||(39460994-39461166)
chr8 (239-373)||(12670285-12670418)
chr8 (304-408)||(12625920-12626025)
chr8 (249-373)||(2626495-2626622)
chr8 (241-409)||(13160669-13160837)
chr8 (239-392)||(44530114-44530268)
chr8 (239-392)||(44781520-44781675)
chr8 (239-373)||(20869535-20869666)
chr8 (298-376)||(5135321-5135399)
chr8 (249-376)||(20284101-20284232)
chr8 (298-406)||(29877119-29877227)
chr8 (239-409)||(17823541-17823712)
chr8 (239-392)||(18164776-18164929)
chr8 (249-407)||(45071241-45071398)
chr8 (239-408)||(6760787-6760959)
chr8 (249-376)||(21070729-21070861)
chr8 (298-373)||(19729367-19729440)
chr8 (249-347)||(26954108-26954206)
chr8 (298-408)||(20869948-20870060)
chr8 (239-392)||(29521701-29521855)
chr8 (239-407)||(42083699-42083868)
chr8 (304-392)||(5689662-5689750)
chr8 (304-408)||(10857859-10857964)
chr8 (249-408)||(25250498-25250659)
chr8 (352-408)||(40444845-40444901)
[»] chr5 (27 HSPs)
chr5 (239-408)||(38879546-38879718)
chr5 (239-408)||(43334167-43334339)
chr5 (249-389)||(27328728-27328870)
chr5 (239-408)||(3771307-3771474)
chr5 (239-408)||(24448855-24449025)
chr5 (298-408)||(29334420-29334531)
chr5 (239-408)||(41014284-41014453)
chr5 (239-376)||(19142975-19143111)
chr5 (239-409)||(1565396-1565567)
chr5 (239-373)||(8170019-8170152)
chr5 (239-316)||(209019-209096)
chr5 (333-408)||(16957373-16957449)
chr5 (238-348)||(22187249-22187359)
chr5 (260-408)||(32703411-32703557)
chr5 (239-383)||(39301089-39301234)
chr5 (239-408)||(35710278-35710446)
chr5 (298-390)||(43574631-43574723)
chr5 (298-409)||(16880646-16880757)
chr5 (239-271)||(23974746-23974778)
chr5 (232-271)||(31694245-31694284)
chr5 (239-270)||(39079904-39079935)
chr5 (298-405)||(7368423-7368528)
chr5 (354-408)||(19093894-19093948)
chr5 (351-409)||(30877563-30877621)
chr5 (298-409)||(7097759-7097869)
chr5 (298-370)||(20135629-20135703)
chr5 (351-392)||(25622538-25622579)
[»] chr6 (15 HSPs)
chr6 (239-408)||(1354757-1354925)
chr6 (239-408)||(1346929-1347097)
chr6 (239-408)||(12221914-12222087)
chr6 (256-408)||(29355855-29356009)
chr6 (239-376)||(3815109-3815247)
chr6 (248-376)||(9161098-9161227)
chr6 (250-392)||(32728173-32728314)
chr6 (351-408)||(12885991-12886048)
chr6 (239-376)||(13905012-13905148)
chr6 (298-408)||(26097185-26097293)
chr6 (351-409)||(10734904-10734962)
chr6 (351-408)||(6808473-6808530)
chr6 (249-350)||(20400643-20400743)
chr6 (298-408)||(25557750-25557858)
chr6 (298-370)||(6024258-6024332)
[»] scaffold0258 (1 HSPs)
scaffold0258 (239-408)||(13024-13193)
[»] scaffold0187 (2 HSPs)
scaffold0187 (249-373)||(10085-10207)
scaffold0187 (249-373)||(20413-20535)
[»] scaffold0168 (1 HSPs)
scaffold0168 (239-408)||(30544-30712)
[»] scaffold0057 (2 HSPs)
scaffold0057 (249-408)||(46807-46966)
scaffold0057 (239-392)||(24788-24937)
[»] scaffold0049 (1 HSPs)
scaffold0049 (249-409)||(58953-59115)
[»] scaffold1176 (1 HSPs)
scaffold1176 (249-392)||(1603-1744)
[»] scaffold0311 (1 HSPs)
scaffold0311 (304-392)||(10841-10929)
[»] scaffold0015 (1 HSPs)
scaffold0015 (298-408)||(48634-48742)
[»] scaffold0954 (1 HSPs)
scaffold0954 (304-376)||(3575-3647)
[»] scaffold0018 (1 HSPs)
scaffold0018 (301-392)||(72883-72974)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 224 - 525
Target Start/End: Original strand, 28904916 - 28905217
Alignment:
Q  224 tttgcagagggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaag 323  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  28904916 tttgcagagggagttttggtgcaacggtaaagttgttgtcatgtgactaaaaagtcacatgtttaagtccagggaacagtctcttgtgtaaaataacaag 28905015  T
Q  324 gtaagactgtgtacattacaccaaatatgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctttagtaaagcaagtatt 423  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28905016 gtaagactgtgtacattacaccaaatatgggaccctttcccggaccctgcgtaagcgggaactttagtgtaacgggctgccctttagtaaagcaagtatt 28905115  T
Q  424 gtaggagattatccctaaaaaccacacatactcatgcaacagcaaacatgattatgaacatccggnnnnnnnntcaggctttataactaggataaagtta 523  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||        | |||||||||||||||||||||||||    
T  28905116 gtaggagattatccctaaaaaccacacatactcatgcaacaacaaacatgattatgaacatctggaaaaaaaattaggctttataactaggataaagtta 28905215  T
Q  524 ct 525  Q
    ||    
T  28905216 ct 28905217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 28904711 - 28904857
Alignment:
Q  14 cacagacacggacaactaatgcgacactgacatggaaacataatcacatgtgttgattttggacgcaccttccatcacaagtgtcagtgctactaacaat 113  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  28904711 cacagacacggacaactgatgcgacactgacatggaaacataatcacatgtgttgattttggacacgccttccatcacaagtgtcagtgctactaacaat 28904810  T
Q  114 aaataaatgttactcaatcagtacagtatgaacacactatttagtggggaac 165  Q
    ||||||||||||||||||     |||||||||||||| ||||||||||||||    
T  28904811 aaataaatgttactcaat-----cagtatgaacacacaatttagtggggaac 28904857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 54484737 - 54484848
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |    
T  54484737 aacagcctcttgtgtaaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcacc 54484836  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  54484837 gggttgcccttt 54484848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 249 - 392
Target Start/End: Complemental strand, 29366881 - 29366736
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||||||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||| ||||||||     
T  29366881 ggtaaagttgttgtcatgtgactaaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctgcgtacaatacaccaat 29366783  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
     |   |||||||||||||||||||||||||| |||||| ||||||||    
T  29366782 aatggtgggaccccttcccggaccctgcgtatgtgggagctttagtg 29366736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 40272982 - 40272812
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || |||    ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||| ||||    
T  40272982 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgcgtac 40272884  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  40272883 aatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 40272812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 406
Target Start/End: Original strand, 26573115 - 26573282
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||||||| |||| |||||| ||| |||||    
T  26573115 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaa-aacagggtaaggctgcgtaca 26573213  T
Q  339 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccct 406  Q
     |||||||| |  ||||||||| |||||||||||||||| | | || |||||||| | | |||||||||    
T  26573214 atacaccaattggtgggaccccatcccggaccctgcgtatgcgtgagctttagtgcaccaggctgccct 26573282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 34420813 - 34420643
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||| ||||||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||     
T  34420813 ttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacc 34420715  T
Q  339 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |||||||||    ||||||||||||||||||| |||||| |||||| |||||||| |   |||||||||||    
T  34420714 atacaccaaaatggtgggaccccttcccggaccttgcgtatgtgggagctttagtgcacatggctgcccttt 34420643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 389
Target Start/End: Complemental strand, 46421207 - 46421054
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  46421207 ttggcgcaactggtaaagttgttgtcatgtgacttaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 46421109  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaacttta 389  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| |||||    
T  46421108 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagcttta 46421054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 13730774 - 13730602
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||||||||    
T  13730774 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgtgtac 13730676  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||  |   |||||||||||||||||||| || || | |||| |||||||| | |||| ||||||||    
T  13730675 aatacaccaataatggtgggaccccttcccggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 13730602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 373
Target Start/End: Complemental strand, 22123074 - 22122952
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||| |||||||||||||||| ||| |||||  ||| |||||| |  |||||||||||||||||   |||| |||||| ||| ||||| |||||||||    
T  22123074 ggtaaatttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacagtctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaa 22122978  T
Q  349 t-atgggaccccttcccggaccctgc 373  Q
    |  |||||||||||||||||||||||    
T  22122977 tggtgggaccccttcccggaccctgc 22122952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 239 - 407
Target Start/End: Original strand, 22609754 - 22609921
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||||||||||  || ||  |  ||| |||||  |  ||||| |||||||||||||  ||| |||||| ||| |||||    
T  22609754 ttggcgcaacggtaaagttgttgtcatgtgactgtaaggtaacgggttcaagtcttggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtaca 22609851  T
Q  339 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 407  Q
     ||||||||||  ||||||||||||||||||| |||||| | |||| ||| |||| | |||| |||||||    
T  22609852 atacaccaaatggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgccctt 22609921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 408
Target Start/End: Original strand, 26869696 - 26869863
Alignment:
Q  241 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 339  Q
    |||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| |||| |||||||  |||| |||||| ||| |||||     
T  26869696 ggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctctggtgtaaa--aacagggtaaggctgcgtacaa 26869793  T
Q  340 tacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||||||||  ||||||||||| ||||||| |||||| | |||| |||| ||| | |||| ||||||||    
T  26869794 tacaccaaatggtgggaccccttgccggaccatgcgtatgcgggagctttggtgcaccgggttgcccttt 26869863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 13628948 - 13628790
Alignment:
Q  252 aaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata- 350  Q
    |||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||| | |||| |||||| ||| ||||| ||||||||  |     
T  13628948 aaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaga-aacagggtaaggctgcgtacaatacaccaataat 13628850  T
Q  351 --tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
      |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  13628849 ggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 13628790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 28927692 - 28927744
Alignment:
Q  81 ccttccatcacaagtgtcagtgctactaacaataaataaatgttactcaatca 133  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  28927692 ccttccatcacaggtgtcagggctactaacaataaataaatgttactcaatca 28927744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 53996735 - 53996565
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||| |||||||| |||||||||| ||||| ||| ||| | |||| |||||  |  ||||  ||||||||||||| |||| |||||| |||  ||||    
T  53996735 ttggcgctacggtaaatttgttgtcatttgactgaaaggtcacgtgttcaagtcgtggaaacaacctcttgtgtaaaa-aacagggtaaggctgcttaca 53996637  T
Q  339 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |||||||||    |||||||||||||| ||| ||||||| |||||| |||||||| | |||||||||||||    
T  53996636 atacaccaaaatggtgggaccccttccctgacactgcgtatgtgggagctttagtgcaccgggctgcccttt 53996565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 7697055 - 7696908
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |  ||| |||||| |  |||||||||||||||||   |||| |||||| ||| ||||    
T  7697055 ttggcgcaactggtaaagttgttgtcatgtgactaaaaggtcacgggttcaagtcctggaaacagtctcttgtgtaa---aacagggtaaggctgcgtac 7696959  T
Q  338 attacaccaaatatgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||||    | ||||||||||||| |||| || |||||| || |||||    
T  7696958 aatacaccaaat----ggccccttcccggacactgcatatgtgggagctctagtg 7696908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 28905246 - 28905288
Alignment:
Q  554 agaaatatataagcatgaaaatgagcatcaaaacccaaagttg 596  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28905246 agaaatatataagcatgaaaatgagcatcaaaacccaaagttg 28905288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 39203515 - 39203672
Alignment:
Q  250 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 349  Q
    |||||||||||||||||||||| ||| ||| || ||| ||||||    ||||| |||||||||||||   || ||||||  || ||||| ||||||||||    
T  39203515 gtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtccttgaaacagcctcttgtgtaaaa---cagggtaaggttgcgtacaatacaccaaat 39203611  T
Q  350 a-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
      ||||||||||||||||||| ||| || | |||| |||||||| | |||| |||||||||    
T  39203612 ggtgggaccccttcccggaccttgcatatgcgggagctttagtgcaccgggttgcccttta 39203672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 389
Target Start/End: Complemental strand, 8247859 - 8247706
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| ||||||  || ||||    
T  8247859 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggttgcgtac 8247761  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaacttta 389  Q
    | ||||||||  |   |||||| ||||||||||||||||||| | |||| |||||    
T  8247760 aatacaccaataatggtgggactccttcccggaccctgcgtatgcgggagcttta 8247706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 30928310 - 30928167
Alignment:
Q  245 caacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacac 344  Q
    ||||||| ||||| ||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||||||||||  |||||| | |||||    
T  30928310 caacggtcaagttcttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacaaggtaaggttgtgtaaaatacac 30928212  T
Q  345 caaatat-gggaccccttcccggaccctgcgtaagtgggaacttt 388  Q
    ||| |   |||||||||||||||||||||| || |||||| ||||    
T  30928211 caattggcgggaccccttcccggaccctgcatatgtgggagcttt 30928167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 45620998 - 45620890
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||| | |  ||||| ||||||||||||| |||| |||||| ||| |||||    
T  45620998 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagttctggaaacagcctcttgtgtaaaaaaacagggtaaggctgcgtaca 45620899  T
Q  339 ttacaccaa 347  Q
     ||||||||    
T  45620898 atacaccaa 45620890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 1217077 - 1217245
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||| ||||||| ||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||   || |||||| ||| ||||    
T  1217077 ttggcgcaactggtaaagttgtagtcatgtcactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgtac 1217173  T
Q  338 attacaccaaatat-gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||   |||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1217174 aatacaccaaatggcgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1217245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 389
Target Start/End: Original strand, 9276317 - 9276401
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgggaccccttcccggaccctgcgtaagtgggaacttta 389  Q
    ||||||||||||| |||| |||||| ||| ||||| ||||||||||   |||||| ||||||||||||||||| | ||||||||||    
T  9276317 ctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtggaccctttcccggaccctgcgtatgcgggaacttta 9276401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 6411931 - 6411838
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| |||||||||| ||||||||||||||| |||| |||||| | |||| ||||||||    
T  6411931 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaatgatgggaccccttcccagaccttgcgtatgcgggagctttagtg 6411838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 12914205 - 12914070
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||| |||||||  ||| ||| || ||| |||||| |  ||||| ||||||||||||| |||| |||||| | | ||||    
T  12914205 ttggcgcaactggtaaagttgttgtaatgtgaccgaaaggtcacaagttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggcggcgtac 12914107  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgc 373  Q
    | ||||||||||  || ||||||||||| ||||||||    
T  12914106 aatacaccaaatggtgagaccccttcccagaccctgc 12914070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 45786326 - 45786213
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgta 394  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||| ||||   ||||||||||||||||||||| | |  ||| |||||||| |    
T  45786326 aacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgaatgctggagctttagtgca 45786228  T
Q  395 acgggctgcccttta 409  Q
     |||| |||||||||    
T  45786227 ccgggttgcccttta 45786213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 408
Target Start/End: Original strand, 15797286 - 15797377
Alignment:
Q  318 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || |||||| || ||||| | |||| ||||||||    
T  15797286 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgtgggagctctagtgcaccgggttgcccttt 15797377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 34771455 - 34771364
Alignment:
Q  318 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||||||||||||    
T  34771455 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggctgcccttt 34771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 829618 - 829581
Alignment:
Q  232 gggagttttggcgcaacggtaaagttgttgtcatgtga 269  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  829618 gggagttttggcgcaacggtaaagttgttgtcacgtga 829581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 25517275 - 25517170
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 402  Q
    ||||||||||||| |||||| || | ||| ||||| ||||| ||||  ||||||||||||||||| |||||||| |  ||| |||||||| | |||| ||    
T  25517275 ctcttgtgtaaaaaaacaagatatggctgcgtacaatacacaaaatggtgggaccccttcccggatcctgcgtatgctggagctttagtgcaccgggttg 25517176  T
Q  403 cccttt 408  Q
    ||||||    
T  25517175 cccttt 25517170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 50625010 - 50624953
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||| |||||| || |||||||||||||||| |||||||| | |||||||||||||    
T  50625010 tgggacgccttcctgggccctgcgtaagtgggagctttagtgcaccgggctgcccttt 50624953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 25944457 - 25944627
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||| ||||||||||||||| |||||| ||| |||    ||| |||||| |  ||| | |||| |||||||| |||  || ||| ||| |||||    
T  25944457 ttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcatgggttcaagtcctggaaaccgcctctcgtgtaaaa-aactgggcaaggctgagtaca 25944555  T
Q  339 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |||||||||    |||||||||||||| ||||||||||| |||||| |||||| | | | |||||||||||    
T  25944556 atacaccaaaatggtgggaccccttccctgaccctgcgtatgtgggagctttagcgcaccaggctgcccttt 25944627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 47624089 - 47624162
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctg 372  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||    
T  47624089 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctg 47624162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 55400986 - 55401022
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaa 275  Q
    ||||| |||||||||||||||||||||||||||||||    
T  55400986 ttggcacaacggtaaagttgttgtcatgtgactaaaa 55401022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 44403725 - 44403587
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||| |||||||||||||| |||||| ||| |||||| ||| || ||| |||||| | ||| || |||||||||||||  |||||||||| ||| | | |    
T  44403725 ttggtgcaacggtaaagttattgtcacgtggctaaaaggtcacaggttaaagtcctgggaatagcctcttgtgtaaaa-gacaaggtaaggctgcggaga 44403627  T
Q  339 tta-caccaaat-atgggaccccttcccggaccctgcgta 376  Q
     || ||| ||||  ||||||||||||||||||||| ||||    
T  44403626 ataccacaaaatggtgggaccccttcccggaccctacgta 44403587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 10870121 - 10870043
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 316  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||    
T  10870121 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa 10870043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 53062026 - 53062080
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtcc 293  Q
    |||||||| |||||||||||||||||||||||| ||| ||| | |||| ||||||    
T  53062026 ttggcgcatcggtaaagttgttgtcatgtgactgaaaggtcacgtgttcaagtcc 53062080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 31592896 - 31593004
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  |||||| |||||||||||||||| || | |||| || ||||| | |    
T  31592896 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggactccttcccggaccctgcatatgcgggagctctagtgcacc 31592992  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  31592993 gggttgcccttt 31593004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 33235584 - 33235629
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 349  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||    
T  33235584 ctcttgtgtaaaaaaacagggtaagactgtgtacaatacactaaat 33235629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 52926304 - 52926219
Alignment:
Q  324 gtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||| ||| ||||| ||||||||||  |||||| ||||||||||||||||||| | |||| |||||| | | |||| ||||||||    
T  52926304 gtaaggctgcgtacaatacaccaaatggtgggacaccttcccggaccctgcgtatgcgggagctttagcgcaccgggttgcccttt 52926219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 516513 - 516569
Alignment:
Q  352 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||||||||||| ||||||||||| | |||| |||||||| | |||| ||||||||    
T  516513 gggaccccttccccgaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 516569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 10795535 - 10795422
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgta 394  Q
    ||||| ||||||||||||| | || |||||| ||| ||||| ||||||||| ||||   |||||||||| |||||||||||| | |||| ||| |||| |    
T  10795535 aacagcctcttgtgtaaaaga-cagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcctggaccctgcgtatgcgggagcttcagtgca 10795437  T
Q  395 acgggctgcccttta 409  Q
     | || |||||||||    
T  10795436 ccaggttgcccttta 10795422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 35417904 - 35417936
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    |||||||||||||||||||||| ||||||||||    
T  35417904 ttggcgcaacggtaaagttgttatcatgtgact 35417936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 46248112 - 46247953
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||  |  ||||| ||||||||||||| |||| |||||||||| ||||| |||||||||    
T  46248112 ggtaaagttgttgtcatgtgactgaaatgtcacgggttcaagtcttggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaa 46248014  T
Q  349 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |  |||||||||||||||||||||||||| | |||| |||||||||| |||| ||||||||    
T  46248013 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtgtaccgggttgcccttt 46247953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 18724714 - 18724582
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| |||||||||    
T  18724714 ttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgtgtaca 18724616  T
Q  339 ttacaccaaat-atgggaccccttcccggaccct 371  Q
     ||||||||||  |||||||||||||||||||||    
T  18724615 atacaccaaatcttgggaccccttcccggaccct 18724582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 249 - 371
Target Start/End: Complemental strand, 41319965 - 41319843
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| || |||||||||| |  ||||||||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  41319965 ggtaaagttgttgtcatgtgactgaaaggtcacaggtttaagtcctggaaacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 41319867  T
Q  349 t-atgggaccccttcccggaccct 371  Q
    | |||||||||||||||| |||||    
T  41319866 tgatgggaccccttcccgaaccct 41319843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 249 - 405
Target Start/End: Original strand, 46991803 - 46991959
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||||||||| |||||| ||    
T  46991803 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgtgtacaatacaccgaa 46991901  T
Q  349 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 405  Q
    |  |||||||||||||||||||||||||| |||||| |||||||| | |||| |||||    
T  46991902 tggtgggaccccttcccggaccctgcgtatgtgggagctttagtgcaccgggttgccc 46991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 14617026 - 14617180
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||| |||||||||||||||  || ||||    
T  14617026 ttggcgcaaccggtaaagttgttgtcatgtgactgaaaggtcacgagttcaagtcctggaaacagcctcttgtgt-aaataacaaggtaaggttgcgtac 14617124  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||||  ||||| ||||||||||||||||| || | |||| ||||||||    
T  14617125 aatacaccaaatggtgggatcccttcccggaccctgcatatgcgggagctttagtg 14617180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 18944631 - 18944804
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| || ||| ||| || |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  18944631 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaaggcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 18944729  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaac-tttagtgtaacgggctgcccttt 408  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| | ||||||| | |||| ||||||||    
T  18944730 aatacaccaacaatggtgggaccccttcccggaccctgcgtatgcgggagcttttagtgcaccgggttgcccttt 18944804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 35117930 - 35117797
Alignment:
Q  246 aacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacacc 345  Q
    ||||||||||||||||||| |||||| ||| ||| |  ||| |||||| |  || || ||||||||||||||| || |||||| ||||||||| ||||||    
T  35117930 aacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaatagcctcttgtgtaaaata-cagggtaaggctgtgtacaatacacc 35117832  T
Q  346 aaatatg---ggaccccttcccggaccctgcgtaa 377  Q
    ||| |||   |||||||||||||||||||||||||    
T  35117831 aaaaatgatgggaccccttcccggaccctgcgtaa 35117797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 34725266 - 34725098
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  34725266 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 34725170  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||| ||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  34725169 aatacactaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 34725098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 392
Target Start/End: Complemental strand, 23768479 - 23768336
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| || ||| |||||  |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  23768479 ggtaaagttgttgtcatgtgactgtaaggtcacaggttcaagtcatggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 23768381  T
Q  349 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    |  |||||| ||||||| ||||||||||| | |||| ||||||||    
T  23768380 tggtgggacaccttcccagaccctgcgtatgcgggagctttagtg 23768336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 392
Target Start/End: Original strand, 27474280 - 27474422
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| || ||| |||||  |  ||||||||||||||||||  |||| || ||  ||| ||||| |||||  ||    
T  27474280 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcttggaaacagtctcttgtgtaaa--aacagggcaaagctgcgtacaatacactgaa 27474377  T
Q  349 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    |  |||||||||||||||||||||||||| | |||| ||||||||    
T  27474378 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 27474422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 4349705 - 4349797
Alignment:
Q  318 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  4349705 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 4349797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 253 - 408
Target Start/End: Original strand, 8197046 - 8197201
Alignment:
Q  253 aagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-t 351  Q
    ||||||||||||||||||| ||| ||| |  ||| |||||| |  ||  | ||||||||||||| |||| |||||| ||  ||||| ||||||||||  |    
T  8197046 aagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggtaattgcctcttgtgtaaaa-aacatggtaaggctacgtacagtacaccaaatggt 8197144  T
Q  352 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |||||||||| ||||||||||||| || ||| |||||||||| |||| ||||||||    
T  8197145 aggaccccttctcggaccctgcgtatgttggagctttagtgtaccgggttgcccttt 8197201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 19701559 - 19701713
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||| |||||||||||||| ||||||| ||| ||| |  |||||||||  |  ||||| ||||||||||||| |||  ||||||  || |||||    
T  19701559 ttggcgcaacagtaaagttgttgtcgtgtgactgaaatgtcacgggtttaagtcatgaaaacagcctcttgtgtaaaa-aacttggtaaggatgggtaca 19701657  T
Q  339 ttacaccaaa--tatgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
     |||||||||    |||| ||||||||||||||||||||| | |||| ||||||||    
T  19701658 atacaccaaaatggtggggccccttcccggaccctgcgtatgcgggagctttagtg 19701713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 6983978 - 6983811
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||| |||||||||||||||| |||||| ||| ||| || ||| |||||| |  ||||| |||  || ||||| |||| ||||||  || |||||    
T  6983978 ttggcgcaatggtaaagttgttgtcacgtgactgaaaggtcacaggttcaagtcctggaaacagcctc--gtataaaa-aacagggtaagtatgcgtaca 6983882  T
Q  339 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     ||||||||||  ||||||||||| |||||||||||||| |  ||| |||| ||| | |||||||||||||    
T  6983881 atacaccaaatggtgggacccctttccggaccctgcgtaggcaggagctttggtgcaccgggctgcccttt 6983811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 20999952 - 20999850
Alignment:
Q  306 cttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcc 404  Q
    ||||||||||| ||||||| ||| ||| ||||| |||||||||| ||||| |||||||| | |||||||||| | |||| |||||||| | |||||||||    
T  20999952 cttgtgtaaaa-aacaaggcaaggctgcgtacaatacaccaaatgatggggccccttccggcaccctgcgtacgcgggagctttagtgcaccgggctgcc 20999854  T
Q  405 cttt 408  Q
    ||||    
T  20999853 cttt 20999850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 30395898 - 30395742
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  30395898 ttggcgcaactggtaaagttgttgtcatgtgactttaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 30395800  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||  |   |||||||||||||||||||| || || | |||| ||||||||    
T  30395799 aatacaccaataatggtgggaccccttcccggaccccgcatatgcgggagctttagtg 30395742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 373
Target Start/End: Original strand, 47214498 - 47214632
Alignment:
Q  238 tttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||||||||||| |||   |||| ||||||  || |||    
T  47214498 tttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagtctcttgtttaa---aacagggtaaggttgcgta 47214594  T
Q  337 cattacaccaaat-atgggaccccttcccggaccctgc 373  Q
    || ||||||||||  |||||||||||||| ||||||||    
T  47214595 caatacaccaaatggtgggaccccttcccagaccctgc 47214632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 52910206 - 52910379
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||| |||||||||||||||||||||||||||| ||| ||| || ||| || ||  |  ||||| |||||  |||||| |||| |||| |||||||||||    
T  52910206 ttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcacaggttcaactcttggaaacagcctcttaggtaaaaaaacagggtaggactgtgtaca 52910305  T
Q  339 ttacaccaaat-------atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 405  Q
     |||||| |||        ||||||||||||| ||| ||| |||| ||||||||||||||| | | ||||||||    
T  52910306 atacacctaatggttatggtgggaccccttcctggaacctccgtatgtgggaactttagtgcaccaggctgccc 52910379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 20036209 - 20036347
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||  ||||||||||||   | | ||||||| || || ||    
T  20036209 ttggcgcaatggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacaaactcttgtgtaaagagaaagggtaagattgcgttca 20036308  T
Q  339 ttacaccaaat-atgggaccccttcccggaccctgcgta 376  Q
     ||||||||||  ||| ||||||||||||||||||||||    
T  20036309 atacaccaaatggtggaaccccttcccggaccctgcgta 20036347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 22327088 - 22327185
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||||| |||||||||||||||||||| ||| |||||  ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||||||||    
T  22327088 ttggcgcaacggcaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgtgtac 22327185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 32632726 - 32632592
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  32632726 ttggcgcaactggtaaagttgttgtcatatgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 32632629  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgc 373  Q
    | ||||||||||  ||||||||||||||  |||||||    
T  32632628 aatacaccaaatggtgggaccccttcccaaaccctgc 32632592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 349
Target Start/End: Complemental strand, 4430185 - 4430086
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| |  |||||||||  |  |||||| |||||||||||| |||| |||||||||| ||||| |||||||||    
T  4430185 ggtaaagttgttgtcatgtgactggaaggtcacgggtttaagtcttgaaaacagtatcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaa 4430087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 10668208 - 10668385
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtga-----ctaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactg 332  Q
    |||||||||| |||||||||||||||||||||     || ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||||||||||  ||    
T  10668208 ttggcgcaactggtaaagttgttgtcatgtgatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacaaggtaaggttg 10668306  T
Q  333 tgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     ||||| ||||||||  ||||   ||||||||||||| ||||||||| | |||| |||||||| | |||| ||||||||    
T  10668307 cgtacaatacaccaataatggtgggaccccttcccggtccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10668385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 20004251 - 20004090
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| |||| |||||||| ||||||||||| ||| ||||| ||||||||     
T  20004251 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctctcgtgtaaaa-aacaaggtaaggctgcgtacaatacaccaat 20004153  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |   |||||||||||||| ||||| || || | |||| |||||||| | |||| ||||||||    
T  20004152 aatggtgggaccccttcccagaccccgcatatgcgggagctttagtgcaccgggttgcccttt 20004090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 392
Target Start/End: Original strand, 27201646 - 27201791
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| ||||||||| | | |||| |||||| ||| ||||| |||||||||    
T  27201646 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtgtcaga-aacagggtaaggctgcgtacaatacaccaaa 27201744  T
Q  349 tatgg---gaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
     ||||   |||||||||||||||| |||||| | |||| ||||||||    
T  27201745 aatggtgggaccccttcccggaccttgcgtatgcgggagctttagtg 27201791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 35005171 - 35005283
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgta 394  Q
    ||||| ||||||||||||| |||| |||||| |||  |||| ||||||||| ||||   ||||||||||||||||||||||| | |||  |||||||| |    
T  35005171 aacagcctcttgtgtaaaa-aacagggtaaggctgcatacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcgggcgctttagtgca 35005269  T
Q  395 acgggctgcccttt 408  Q
     |||| ||||||||    
T  35005270 ccgggttgcccttt 35005283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 45812705 - 45812627
Alignment:
Q  239 ttggcgcaacgg-taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 316  Q
    |||||||||| | ||||||||||||||||||||| ||| ||| || ||| |||||| |  |||||||||||||||||||    
T  45812705 ttggcgcaactgataaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctgaaaacagtctcttgtgtaaaa 45812627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 42304264 - 42304223
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  42304264 tgggaccccttcccggaccctgcgtatgtgggagctttagtg 42304223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 18742131 - 18741989
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaa-cagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| || ||  | ||| |||||| |||| ||||| |||| |||||| ||| |||    
T  18742131 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcaagggttcaaatcttgggaaacagtcttttgtataaaaaaacagggtaaggctgcgta 18742032  T
Q  337 cattacaccaaatatgg---gaccccttcccggaccctgcgta 376  Q
    || ||||||||| ||||   ||||||||||| |||||||||||    
T  18742031 caatacaccaaaaatggtgggaccccttcccagaccctgcgta 18741989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 28894700 - 28894660
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtc 279  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  28894700 ttggcgcaacagtaaagttgttgtcatgtgactgaaaagtc 28894660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 31382323 - 31382214
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||  ||| | |||| ||| ||||| ||||||||||  ||||||||||||| ||||||||| || | |||| ||||| |||| |    
T  31382323 aacagcctcttgtgtaaaa--acaggataaggctgcgtacaatacaccaaatggtgggaccccttcctggaccctgcatatgcgggagctttactgtacc 31382226  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  31382225 gggttgcccttt 31382214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 50811928 - 50812098
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |    | | |||| |  |||||  |||||||||||| |||| ||||||  || |||||    
T  50811928 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacggaatcatgtcctggaaacagcttcttgtgtaaaaaaacagggtaaggttgcgtaca 50812027  T
Q  339 ttacaccaaatatg--ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     ||||||||| |||  |||||||||||||  ||||||||| | |||| ||||| || |  ||||||||||||    
T  50812028 atacaccaaa-atggtggaccccttcccgcgccctgcgtatgcgggagctttaatgcactgggctgcccttt 50812098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 34679395 - 34679356
Alignment:
Q  232 gggagttttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  34679395 gggagctttggcgcaacggtaaagttattgtcatgtgact 34679356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 12126993 - 12126872
Alignment:
Q  250 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa- 348  Q
    |||||||||||||||||| | | ||| ||| |  |||||||| | |  |||||  ||||||||||   |||| |||||| ||| ||||| |||||||||     
T  12126993 gtaaagttgttgtcatgtaattgaaaggtcacgggtttaagttctggaaacagcttcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaat 12126897  T
Q  349 tatgggaccccttcccggaccctgc 373  Q
    | |||||||||||||||||||||||    
T  12126896 tgtgggaccccttcccggaccctgc 12126872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 15505636 - 15505690
Alignment:
Q  323 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    |||||||||| ||||| ||||||||||  ||||||||||||||| ||||||||||    
T  15505636 ggtaagactgcgtacaatacaccaaatggtgggaccccttcccgaaccctgcgta 15505690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 19932856 - 19932785
Alignment:
Q  307 ttgtgtaaaataacaaggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgta 376  Q
    |||||||||| |||| |||||| ||| ||||| ||||||||| ||||   |||||||||||||||||||||||    
T  19932856 ttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgta 19932785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 25554891 - 25554837
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtcc 293  Q
    ||||||||| |||||||||||||||| |||||||||| | | | |||||||||||    
T  25554891 ttggcgcaatggtaaagttgttgtcacgtgactaaaaggccacgtgtttaagtcc 25554837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 30682868 - 30682938
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    |||||||||||||  ||||||||||| ||||||||| ||| |||||  ||||||||||||||||||| ||||||    
T  30682868 ctcttgtgtaaaa--acaaggtaagattgtgtacat-acaacaaatggtgggaccccttcccggaccgtgcgta 30682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 269
Target Start/End: Complemental strand, 31442546 - 31442516
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtga 269  Q
    |||||||||||||||||||||||||||||||    
T  31442546 ttggcgcaacggtaaagttgttgtcatgtga 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 35253295 - 35253222
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 373  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||    
T  35253295 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgc 35253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 2435956 - 2435848
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||| ||| || | |||||| ||| |||||    
T  2435956 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtgaaa-aatagggtaagcctgcgtaca 2435858  T
Q  339 ttacaccaaa 348  Q
     |||||||||    
T  2435857 atacaccaaa 2435848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 14988078 - 14988009
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaata 318  Q
    ||||||||||||||||| |||||| |||||| || ||| |||||| |  |||||| |||| |||||||||    
T  14988078 ggtaaagttgttgtcatatgactagaaagtcacaagttcaagtcctgaaaacagtatcttatgtaaaata 14988009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 22930237 - 22930104
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| || |||||||||  |||| ||||||  |||| ||    
T  22930237 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagccttttgtgtaaa--aacagggtaaggttgtg-ac 22930141  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgc 373  Q
    | ||||||||||  ||||||||||||| |||||||||    
T  22930140 aatacaccaaatggtgggaccccttcctggaccctgc 22930104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 408
Target Start/End: Complemental strand, 38478438 - 38478282
Alignment:
Q  250 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 349  Q
    ||||| |||||||||||||||| ||| ||| |  ||| ||||||    ||||| |||||||||||   |||| |||||| ||| ||||| ||||||||||    
T  38478438 gtaaacttgttgtcatgtgactgaaaggtcacgggttcaagtcctagaaacagcctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaat 38478342  T
Q  350 -atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
      ||| |||||||| |||||||||| || | |||| || ||||| | |||| ||||||||    
T  38478341 ggtggaaccccttctcggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 38478282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 50606504 - 50606561
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  50606504 tgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 50606561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 10378826 - 10378738
Alignment:
Q  318 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 405  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||  ||||||||| || | |||| |||||||| | ||||||||||    
T  10378826 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcttggaccctgcatatgcgggagctttagtgcaccgggctgccc 10378738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 43207478 - 43207510
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    |||||||||||||||||||||||||| ||||||    
T  43207478 ttggcgcaacggtaaagttgttgtcacgtgact 43207510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 45402179 - 45402251
Alignment:
Q  334 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 405  Q
    ||||| ||||||||||  |||||||||||||| ||||||||||| | |||| |||||||| | |||| |||||    
T  45402179 gtacaatacaccaaatggtgggaccccttcccagaccctgcgtatgcgggagctttagtgcaccgggttgccc 45402251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 239 - 409
Target Start/End: Complemental strand, 23419843 - 23419673
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||| |||||||||||||||| ||| || ||| |||| | |  ||||| ||||||||||||| |||| |||||||||| |||||    
T  23419843 ttggcgcaacggtaaagttgctgtcatgtgactaaaaggtcacaggttcaagttctggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtaca 23419745  T
Q  339 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
     ||||||||||  |||||||||||||  |||| |||||  | |||  |||||||| | ||||||||||||||    
T  23419744 atacaccaaatggtgggaccccttcctagaccttgcgtgtgcgggggctttagtgcatcgggctgcccttta 23419673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 32758226 - 32758394
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| |||||||||||   |||| |||||| ||||||||    
T  32758226 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgtgtac 32758322  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  32758323 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 32758394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 11617756 - 11617589
Alignment:
Q  241 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 339  Q
    |||||||| ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||  ||||||||||||| |||| |||||||||| |||||     
T  11617756 ggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaagactgcgtacaa 11617658  T
Q  340 tacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 407  Q
    ||||||||||  ||||||||||||| |||||||||||| |  ||| |||||||| | |||| |||||||    
T  11617657 tacaccaaatggtgggaccccttcctggaccctgcgtatgcaggacctttagtgcaccgggttgccctt 11617589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 42798634 - 42798804
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||  |  ||||||||||||||||||| ||||||||||| ||| ||||    
T  42798634 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcttggaaacagtctcttgtgtaaaa-aacaaggtaaggctgcgtac 42798732  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  |||||||| |||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  42798733 aatacaccaaatggtgggaccctttcccggaccctgcatatgcgggagctatagtgcatcgggttgcccttt 42798804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 35334984 - 35334848
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  |||||||||  |||||||| |||| |||||||||||||||    
T  35334984 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgagttcaagtcctggaaacagtctc--gtgtaaaa-aacagggtaagactgtgtac 35334888  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    | |||||| |||  ||||||||||||||||||||||||||    
T  35334887 aatacaccgaatggtgggaccccttcccggaccctgcgta 35334848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 7879663 - 7879773
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    |||| |||||||||||||| ||||||||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| ||| |||| | |    
T  7879663 aacaatctcttgtgtaaaa-aacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcacc 7879761  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  7879762 gggttgcccttt 7879773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 409
Target Start/End: Complemental strand, 2541190 - 2541018
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaag-tcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    |||||||||| |||||||||||||||||||||||  |||| || |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| |||    
T  2541190 ttggcgcaactggtaaagttgttgtcatgtgactggaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgta 2541092  T
Q  337 cattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    |  ||||||||||  |||||||||||||||| ||||||||| | |||| |||||||| | |||| | |||||||    
T  2541091 ctatacaccaaatggtgggaccccttcccggtccctgcgtatgcgggagctttagtgcaccgggtttcccttta 2541018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 21172177 - 21172009
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||| ||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||   || |||||| ||| ||||    
T  21172177 ttggcgcaactggtaaagttgttgtcatgtaactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgtac 21172081  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  21172080 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 21172009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 408
Target Start/End: Original strand, 42805500 - 42805661
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||||||||| ||||||||     
T  42805500 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgtgtacaatacaccaat 42805598  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |   |||||||||||||||||||| || || | |||| |||||||| | |||| ||||||||    
T  42805599 aatggtgggaccccttcccggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 42805661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 19266416 - 19266553
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||| |||||||||||||||||||||||||||| ||| ||||   ||| |||||| |  || || | |||| |||||| |||| |||||| ||| |||||    
T  19266416 ttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcgtgggttcaagtcctgaaaatagccacttgcgtaaaa-aacagggtaaggctgcgtaca 19266514  T
Q  339 ttacaccaaa-tatgggaccccttcccggaccctgcgta 376  Q
     ||||||||| | ||||| ||||||||||||||||||||    
T  19266515 atacaccaaattgtgggatcccttcccggaccctgcgta 19266553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 28362314 - 28362165
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||||||| || ||| ||| || ||| ||||||    ||| | ||||||||||||| |||  |||||| ||| |||||    
T  28362314 ttggcgcaacggtaaagttgttgtcatgtggctgaaaggtcacaggttcaagtcctagaaactgcctcttgtgtaaaa-aacttggtaaggctgcgtaca 28362216  T
Q  339 ttacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaacttt 388  Q
     ||||||||||  |||||||||||||| |||| ||| || |||||| ||||    
T  28362215 atacaccaaatggtgggaccccttcccagaccttgcatatgtgggagcttt 28362165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 1408488 - 1408560
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    ||||||||||||| ||||||||||| ||||||||| |||| |||||  ||||||||||||||||||||||||||    
T  1408488 ctcttgtgtaaaa-aacaaggtaaggctgtgtacaatacagcaaatggtgggaccccttcccggaccctgcgta 1408560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 19265781 - 19265948
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |  ||| |||||  |   |||| | |||||||||||  | | |||||| ||| |||||    
T  19265781 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcttggatacagccgcttgtgtaaaa--agagggtaaggctgcgtaca 19265878  T
Q  339 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     ||||||||||  ||||||||||||||||| ||| | || |||||| |||||||| | |||||||||||||    
T  19265879 atacaccaaatggtgggaccccttcccgga-cctacatatgtgggagctttagtgcaccgggctgcccttt 19265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 409
Target Start/End: Complemental strand, 48735291 - 48735121
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaa-cagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| ||||||   ||| ||  |||||||||||||   || |||||| ||| |||    
T  48735291 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtccttggaaacaacctcttgtgtaaaa---cacggtaaggctgcgta 48735195  T
Q  337 cattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    || ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| |||||||||    
T  48735194 caatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttta 48735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 10693229 - 10693108
Alignment:
Q  250 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 349  Q
    |||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |    |||||| ||| ||||| ||||||||||    
T  10693229 gtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaagag---ggtaaggctgcgtacaatacaccaaat 10693133  T
Q  350 a-tgggaccccttcccggaccctgc 373  Q
      |||||||||||||||||||||||    
T  10693132 ggtgggaccccttcccggaccctgc 10693108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 372
Target Start/End: Complemental strand, 33872068 - 33871946
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| |||||  ||| |||||| |  ||||  ||||||||||||  |||| | |||| ||| ||||| |||||||||    
T  33872068 ggtaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgtgtaaa--aacaggataaggctgcgtacaatacaccaaa 33871971  T
Q  349 t-atgggaccccttcccggaccctg 372  Q
    |  |||||||||||||| |||||||    
T  33871970 tggtgggaccccttcccagaccctg 33871946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 42476849 - 42476961
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||||||| ||| |   || |||| | |  |||||||||||||||||||   ||||||||| ||| ||||| |||||||||    
T  42476849 ggtaaagttgttgtcatgtgactaaaaggtcacggattcaagttctggaaacagtctcttgtgtaaaa---caaggtaaggctgcgtacaatacaccaaa 42476945  T
Q  349 t-atgggaccccttcc 363  Q
    |  |||||||||||||    
T  42476946 tggtgggaccccttcc 42476961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 19427059 - 19426925
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| ||||||||||||| || | |||||||||| ||||    
T  19427059 ttggcgcaactggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aatagggtaagactgcgtac 19426961  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgc 373  Q
    | ||||||||||  ||||| |||||| ||||||||||    
T  19426960 aatacaccaaatggtggga-cccttctcggaccctgc 19426925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 408
Target Start/End: Complemental strand, 42391251 - 42391100
Alignment:
Q  255 gttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgg 353  Q
    ||||||||||||||||| ||| ||| |  ||| |||||| |  |||||  ||||||||||||   || |||||| ||| ||||| ||||||||||  |||    
T  42391251 gttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcttcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgg 42391155  T
Q  354 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  42391154 gaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 42391100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 47078023 - 47077943
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaata 318  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  |||||||||||||||||||||    
T  47078023 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagtctcttgtgtaaaata 47077943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 34626366 - 34626208
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||| | ||| | | ||  || |||||| |  ||||| ||| |||||||||  ||| |||||| ||| || || |||||||||    
T  34626366 ggtaaagttgttgtcatgtgattgaaaggccacagattcaagtcctggaaacagcctcctgtgtaaaa--acagggtaaggctgcgttcaatacaccaaa 34626269  T
Q  349 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |  ||||| |||||||||||||||||||| | |||| |||||||  | |||| ||||||||    
T  34626268 tggtgggatcccttcccggaccctgcgtatgcgggagctttagttcatcgggttgcccttt 34626208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 3469348 - 3469316
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    |||||||||||||||||||||||||||||||||    
T  3469348 ttggcgcaacggtaaagttgttgtcatgtgact 3469316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 373
Target Start/End: Original strand, 27629599 - 27629734
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||| ||||  ||| ||| |  ||| |||||| |  ||||| ||||||||||||| |||| ||||||  || |||     
T  27629599 ttggcgcaactggtaaagttgttgtcatttgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggttgcgtaa 27629697  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgc 373  Q
    | ||||||||||  |||||||||||||||| ||||||    
T  27629698 aatacaccaaatggtgggaccccttcccgggccctgc 27629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 40463842 - 40463979
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||     |||||||||||||||||||  ||  |||||| ||| |||     
T  40463842 ttggcgcaaccggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcatagaaacagtctcttgtgtaaaa--actgggtaaggctgcgtat 40463939  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    | ||||||||||  |||||||||||| |||||||||||||    
T  40463940 aatacaccaaatggtgggaccccttctcggaccctgcgta 40463979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 13805068 - 13805204
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||| ||||||||||||||||||||||| ||| ||  |  ||| |||||| |  || || |||| |||||||| |    |||||| |||||||||    
T  13805068 ttggcgcaatggtaaagttgttgtcatgtgactgaaaggtaacgggttcaagtcctggaaatagcctctggtgtaaaaca--ggggtaaggctgtgtaca 13805165  T
Q  339 ttacaccaaat-atgggaccccttcccggaccctgcgta 376  Q
     ||||||||||  ||||||| ||||| ||||||||||||    
T  13805166 atacaccaaatggtgggaccacttcctggaccctgcgta 13805204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 361
Target Start/End: Complemental strand, 48123653 - 48123531
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||| ||||||| || ||| |||    ||| |||||| |  ||||| ||||||||| |||||||| ||||| ||||  ||||    
T  48123653 ttggcgcaacggtaaagttgttatcatgtgtctgaaaggtcatgggttcaagtcctggaaacagcctcttgtgt-aaataacagggtaaaactgcataca 48123555  T
Q  339 ttacaccaaat-atgggacccctt 361  Q
     ||||||||||  |||||||||||    
T  48123554 atacaccaaatggtgggacccctt 48123531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 407
Target Start/End: Original strand, 18747511 - 18747621
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| || |||||||||| | || |||||| ||| ||| | |||||||| |  ||||||||||||| | |||||||||| | |||| |||||||| | |    
T  18747511 aacagccttttgtgtaaaaaagcagggtaaggctgcgtataatacaccaattggtgggaccccttcctgaaccctgcgtatgcgggagctttagtgcacc 18747610  T
Q  397 gggctgccctt 407  Q
    |||||||||||    
T  18747611 gggctgccctt 18747621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 14732992 - 14732951
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtc 279  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  14732992 ttggcgcaactggtaaagttgttgtcatgtgactgaaaagtc 14732951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 381
Target Start/End: Complemental strand, 15108506 - 15108424
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgg 381  Q
    |||||| ||||||||||||  |||||||||| ||||||||| |||| |||||| ||||| ||||||||  |||||| ||| ||||    
T  15108506 aacagtttcttgtgtaaaa--acaaggtaaggctgtgtacaatacatcaaatagtgggatcccttcccaaaccctgtgtatgtgg 15108424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 23231588 - 23231660
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgta 376  Q
    |||||||||||||||  |||||||| ||| ||| | |||||| ||| |||||||||||||||| ||||||||||    
T  23231588 ctcttgtgtaaaatat-aaggtaaggctgcgtataatacaccgaatgatgggaccccttcccgaaccctgcgta 23231660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 389
Target Start/End: Original strand, 38604552 - 38604642
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaacttta 389  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| ||||||||||  || |||||||| |||||||||||||| | |||| |||||    
T  38604552 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaatggtgagacccctttccggaccctgcgtatgcgggagcttta 38604642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 408
Target Start/End: Original strand, 43557448 - 43557610
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| ||||||||||||| ||||  ||||| ||| ||||| ||||||||     
T  43557448 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagagtaaggctgcgtacaatacaccaat 43557546  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaac-tttagtgtaacgggctgcccttt 408  Q
     |   ||||||||| |||||||| ||||||| | |||| | ||||||| | |||| ||||||||    
T  43557547 aatggtgggaccccctcccggactctgcgtatgcgggagcttttagtgcaccgggttgcccttt 43557610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 233 - 378
Target Start/End: Complemental strand, 47441705 - 47441560
Alignment:
Q  233 ggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactg 332  Q
    |||| ||||||||||||||||||||||||||| |||||| ||| ||| || ||| |||||||   ||||||||||| ||||||| | || |||||| |||    
T  47441705 ggagctttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacaggttcaagtccaagaaacagtctcttttgtaaaa-atcagggtaaggctg 47441607  T
Q  333 tgtacattacaccaaat-atgggaccccttcccggaccctgcgtaag 378  Q
    |||||| ||||||||||  | |||||||||||||||||||| |||||    
T  47441606 tgtacaatacaccaaatggttggaccccttcccggaccctgagtaag 47441560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 408
Target Start/End: Complemental strand, 11054317 - 11054148
Alignment:
Q  238 tttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  |||||||||||||||||   |||| |||||||||| |||    
T  11054317 tttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctgaaaacagtctcttgtgtaa---aacagggtaagactgcgta 11054221  T
Q  337 cattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    || ||||||||||   || ||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  11054220 caatacaccaaatggcggaaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 11054148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 47528687 - 47528530
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||| |||||||||    
T  47528687 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaa 47528591  T
Q  349 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |  ||||||||||||||||||||||  || |||||| || ||||| | |||| ||||||||    
T  47528590 tggtgggaccccttcccggaccctgaatatgtgggagctctagtgcaccgggttgcccttt 47528530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 249 - 376
Target Start/End: Original strand, 40915805 - 40915931
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||| || ||| |  ||| |||||| |  ||||| ||||||||||||  ||||||||||| ||| ||||| |||||||||    
T  40915805 ggtaaagttgttgtcatgtgactataaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacaaggtaaggctgcgtacaatacaccaaa 40915902  T
Q  349 t-atgggaccccttcccggaccctgcgta 376  Q
    |  ||||| ||||||||||||||||||||    
T  40915903 tggtgggagcccttcccggaccctgcgta 40915931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 5648224 - 5648361
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| |||||||||||||  ||| |||||| ||| ||||    
T  5648224 ttggcgcaactggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtac 5648321  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    | ||||||||||  ||||||||||||||||||||||||||    
T  5648322 aatacaccaaatggtgggaccccttcccggaccctgcgta 5648361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 407
Target Start/End: Complemental strand, 6430795 - 6430627
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||  |  ||||| |||||||||||||  ||| |||||| ||| ||||    
T  6430795 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcatggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtac 6430698  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 407  Q
    | ||||||||||  ||||||| |||||||||||||||||| | |||| |||||| | | |||| |||||||    
T  6430697 aatacaccaaatggtgggaccacttcccggaccctgcgtatgcgggagctttagcgcaccgggttgccctt 6430627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 381
Target Start/End: Complemental strand, 5306833 - 5306691
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||| |||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||||  || ||||||  || ||||    
T  5306833 ttggcgcaactggtaaagttgatgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaat--cagggtaaggttgcgtac 5306736  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgg 381  Q
    | ||||||||||  |||||||||||||||||||||||||| ||||    
T  5306735 aatacaccaaatggtgggaccccttcccggaccctgcgtatgtgg 5306691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 408
Target Start/End: Original strand, 35567141 - 35567305
Alignment:
Q  244 gcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattaca 343  Q
    |||||||||||||||||||||||| ||| ||| |||    ||| |||||  |  ||||| | ||||||||||| |||| |||||| |||||||||  |||    
T  35567141 gcaacggtaaagttgttgtcatgtaactgaaaggtcatgggttcaagtcttggaaacagccacttgtgtaaaa-aacagggtaaggctgtgtacaacaca 35567239  T
Q  344 ccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||||  ||||||||||||||| |||||||||  | |||| |||||||| | |||||||||||||    
T  35567240 ccaaatggtgggaccccttcccgaaccctgcgtctgcgggagctttagtgcaccgggctgcccttt 35567305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 17043567 - 17043429
Alignment:
Q  232 gggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagact 331  Q
    |||||| |||||||||||   |||||||||||| |||||| ||| ||| || ||| |||||| |  ||||| |||||||||||||| ||| |||||| ||    
T  17043567 gggagtcttggcgcaacg---aagttgttgtcaagtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaat-acagggtaaggct 17043472  T
Q  332 gtgtacattacaccaaat-atgggaccccttcccggaccctgc 373  Q
    | ||||| ||||||||||  |||||||||||||| ||||||||    
T  17043471 gcgtacaatacaccaaatggtgggaccccttcccagaccctgc 17043429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 30639345 - 30639498
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  30639345 ttggcgcaactggtaaagttgttgtcttgtgactgaaaggtcactggttcaagtcctggaaacagactcttgtgtaaa--aacagggtaaggctgcgtac 30639442  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||||  || |||||||||||||||||||| || | |||| ||||||||    
T  30639443 aatacaccaaatggtgagaccccttcccggaccctgcatatgcgggagctttagtg 30639498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 16408773 - 16408601
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||||||| ||||    
T  16408773 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtac 16408675  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||  |   ||| |||||||||||||||| || || | |||| |||||||| | |||| ||||||||    
T  16408674 aatacaccaataatggtggaaccccttcccggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 16408601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 16911527 - 16911699
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| ||||||    ||||| |||||||||| || | || |||||| ||| ||||    
T  16911527 ttggcgcaactggtaaagttgttgtcatgtgacttaaaggtcacgggttcaagtcctagaaacagcctcttgtgtacaa-atcagggtaaggctgcgtac 16911625  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| ||||||| || |||| ||||||||    
T  16911626 aatacaccaataatggtgggaccccttcccggaccctgcgtacgcgggagctttagtttaccgggttgcccttt 16911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 25629074 - 25629184
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||||||||||||||||| || | |||||| ||||||||| ||||||||||  ||||||||||||||||||||| | || | |||| |||||||| | |    
T  25629074 aacagtctcttgtgtaaaa-aatagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctacatatgcgggagctttagtgcacc 25629172  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  25629173 gggttgcccttt 25629184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 369
Target Start/End: Complemental strand, 48598993 - 48598864
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  48598993 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 48598897  T
Q  338 attacaccaaat-atgggaccccttcccggacc 369  Q
    | ||||||||||  |||||||||||||||||||    
T  48598896 aatacaccaaatggtgggaccccttcccggacc 48598864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 20224949 - 20225117
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||  |||||||||||||   || |||||| ||| ||||    
T  20224949 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaa---cagggtaaggctgcgtac 20225045  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  20225046 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 20225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 20639769 - 20639658
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaa 395  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    |||||||||||||||||||||||||| | |||| |||||||| |     
T  20639769 aacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcac 20639671  T
Q  396 cgggctgcccttt 408  Q
    |||| ||||||||    
T  20639670 cgggttgcccttt 20639658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 409
Target Start/End: Complemental strand, 44363291 - 44363129
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||||||| |||| |||| | ||| |||||   |||||||    
T  44363291 ggtaaagttgttgtcatgtgactgaaaggtcacgagttcaagtcctgaaaacagcctcgtgtgtaaaa-aacagggtagggctgcgtacaacgcaccaaa 44363193  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
     |   |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  44363192 aatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 44363129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 51865148 - 51865038
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||  |||| ||||||||||||||||||||| | |||| ||||| || | |    
T  51865148 aacagcctcttgtgtaaaa-aacatggtaaggctgcgtacaatacaccaaatggtggggccccttcccggaccctgcgtatgcgggagctttattgcacc 51865050  T
Q  397 gggctgcccttt 408  Q
    || |||||||||    
T  51865049 ggactgcccttt 51865038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 392
Target Start/End: Original strand, 54730213 - 54730371
Alignment:
Q  238 tttggcgcaa-cggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    |||||||||| ||||||||||||||||||||||| |||| ||| |  ||| ||||||    ||||| ||||||||||||| || | | |||| ||| |||    
T  54730213 tttggcgcaatcggtaaagttgttgtcatgtgaccaaaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaaaaataggataaggctgcgta 54730312  T
Q  337 cattacaccaa--at-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
     | ||||||||  || |||| |||||||||||||||||||||| | |||| ||||||||    
T  54730313 taatacaccaataatgatggaaccccttcccggaccctgcgtatgcgggagctttagtg 54730371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 33836544 - 33836487
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||||| ||||||||    
T  33836544 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaacgggttgcccttt 33836487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 23501758 - 23501924
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||      |||| ||||||||||||| |||| ||||||  || ||||    
T  23501758 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtc------acagcctcttgtgtaaaa-aacagggtaaggttgcgtac 23501850  T
Q  338 attacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||  ||||   |||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  23501851 aatacaccaataatggtgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 23501924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 30581636 - 30581481
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||||| ||||||||||||||  | ||||||| |||    ||| |||||  |  ||||  ||||||||||||| |||| ||||||  ||||||||    
T  30581636 ttggcgcaacgctaaagttgttgtcacatcactaaaaggtcaagggttcaagtcgtggaaacaacctcttgtgtaaaaaaacagggtaagggtgtgtaca 30581537  T
Q  339 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
     |||||||||    ||||||||||||||||||||||| || || ||| ||||||||    
T  30581536 atacaccaaaatggtgggaccccttcccggaccctgcatatgtaggagctttagtg 30581481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 54966987 - 54967039
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagt 291  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||    
T  54966987 ttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacatgttcaagt 54967039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 30690233 - 30690175
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    |||||||||||||||||||||||||| | |||| |||||||| | | ||||||||||||    
T  30690233 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccaggctgcccttta 30690175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 38755965 - 38755907
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  38755965 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 38755907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 9832421 - 9832313
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || |  |||||| ||||| | |    
T  9832421 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcaggaactctagtgcacc 9832325  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  9832324 gggttgcccttt 9832313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 392
Target Start/End: Original strand, 19027807 - 19027967
Alignment:
Q  232 gggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagact 331  Q
    |||||| ||| ||||| |||| ||||||||||| |||||| ||| ||| |  ||| |||||| |  ||||   |||||||||||| |||| |||||| ||    
T  19027807 gggagtcttgacgcaatggtagagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacaacatcttgtgtaaaa-aacagggtaaggct 19027905  T
Q  332 gtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||| |||||||| |  ||||||||||| || ||| ||||||| |||||| ||||||||    
T  19027906 gcgtacaatacaccaattggtgggacccctttccagactctgcgtatgtgggagctttagtg 19027967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 20908807 - 20908652
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgact-aaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    ||||| ||||||||||||||||||||||||||| |||| ||  |||||| |||||  |  ||||   |||| | ||||| || |||||||| ||| ||||    
T  20908807 ttggcacaacggtaaagttgttgtcatgtgactgaaaatgttacatgttcaagtcatggaaacatcgtcttttctaaaa-aagaaggtaaggctgcgtac 20908709  T
Q  338 attacaccaaa--tatgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | |||||||||    ||||||||||||||| |||||||||| | |||| ||||||||    
T  20908708 aatacaccaaaatggtgggaccccttcccgaaccctgcgtatgcgggagctttagtg 20908652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 348
Target Start/End: Original strand, 25343153 - 25343261
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||| |||||||||||||||| |||||| | | ||| || ||| |||| | |  || |||||||||||||||| |||| |||||| ||| |||||    
T  25343153 ttggcgcaatggtaaagttgttgtcacgtgactgataggtcacaggttcaagttctggaaatagtctcttgtgtaaaa-aacagggtaaggctgcgtaca 25343251  T
Q  339 ttacaccaaa 348  Q
     |||||||||    
T  25343252 atacaccaaa 25343261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 47482907 - 47482850
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||||||||||||||||||| | |||| |||| ||| |||| ||||||||||    
T  47482907 tgggaccccttcccggaccctgcgtatgcgggagctttggtgcaacgagctgcccttt 47482850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 7909390 - 7909313
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    |||||||||||||||||||  ||| ||||||  || ||||| ||||||||||  ||||||||||||||| ||||||||||    
T  7909390 aacagtctcttgtgtaaaa--acagggtaaggttgcgtacaatacaccaaatggtgggaccccttcccgaaccctgcgta 7909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 21646929 - 21647098
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| || ||| |||||| |  ||||| ||||||||||||| || | |||||| ||| ||||    
T  21646929 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaa-aatagggtaaggctgcgtac 21647027  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 405  Q
    | || |||||  |   |||||||||||||| ||||| || || | |||| |||||||| | |||| |||||    
T  21647028 aatataccaataatggtgggaccccttcccagaccccgcatatgcgggagctttagtgcaccgggttgccc 21647098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 47443982 - 47444057
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 373  Q
    ||||| |||||| |||||| |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||    
T  47443982 aacagcctcttgcgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgc 47444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 14983912 - 14983955
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 394  Q
    |||||||||||||||||||||||||| | |||| ||||||||||    
T  14983912 tgggaccccttcccggaccctgcgtatgcgggagctttagtgta 14983955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 40553991 - 40553936
Alignment:
Q  354 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    ||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  40553991 gaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 40553936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 54175089 - 54175200
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata--tgggaccccttccc-ggaccctgcgtaagtgggaactttagtgta 394  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||| |||||||||    |||||||||||||| ||||||||| || | |||| |||||||| |    
T  54175089 aacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaaatggtgggaccccttccccggaccctgcatatgcgggagctttagtgca 54175186  T
Q  395 acgggctgcccttt 408  Q
     |||||||||||||    
T  54175187 ccgggctgcccttt 54175200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 11394930 - 11394988
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    ||||||||||| |||||||||||||| | |||| |||||||| | |||| |||||||||    
T  11394930 tgggacccctttccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11394988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 11404657 - 11404715
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    ||||||||||| |||||||||||||| | |||| |||||||| | |||| |||||||||    
T  11404657 tgggacccctttccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11404715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 35894618 - 35894572
Alignment:
Q  244 gcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaag 290  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||    
T  35894618 gcaacggtaaagttgttgtcctgtgactgaaaagtcgcgggtttaag 35894572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 3580944 - 3580860
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaacttt 388  Q
    ||||||||||||| | || |||||| |||||| || ||||||||||  | ||||||||||||||||||||| || |||||| ||||    
T  3580944 ctcttgtgtaaaa-accatggtaaggctgtgtgcaatacaccaaatgctaggaccccttcccggaccctgcatatgtgggagcttt 3580860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 29207989 - 29207900
Alignment:
Q  318 aacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccct 406  Q
    |||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||    
T  29207989 aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgccct 29207900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 32484311 - 32484368
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  32484311 tgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 32484368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 49938759 - 49938682
Alignment:
Q  240 tggcgcaacggtaaa-gttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 316  Q
    ||||||||||||||| |||||||||| |||||| ||| ||| || ||| |||||| |  ||||| |||||||||||||    
T  49938759 tggcgcaacggtaaaagttgttgtcacgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaa 49938682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 487304 - 487272
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    |||||| ||||||||||||||||||||||||||    
T  487304 ttggcgtaacggtaaagttgttgtcatgtgact 487272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 42164317 - 42164285
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    |||||||||||||||| ||||||||||||||||    
T  42164317 ttggcgcaacggtaaaattgttgtcatgtgact 42164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 49796823 - 49796900
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    ||||| ||||||||| |||  ||| |||||| ||| ||||| ||||||||||  ||||||||||||||| ||||||||||    
T  49796823 aacagcctcttgtgttaaa--acatggtaaggctgcgtacaatacaccaaatggtgggaccccttcccgaaccctgcgta 49796900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 4516520 - 4516354
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||| || |||| |    ||||| ||||||||||||| |||| || ||  ||| |||||    
T  4516520 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacatattcaagttctagaaacagcctcttgtgtaaaa-aacagggcaacgctgcgtaca 4516422  T
Q  339 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 405  Q
     |||||||| |  |||||||||||||||||||||||||| |||| | |||||||||| ||||||||||    
T  4516421 atacaccaattggtgggaccccttcccggaccctgcgtatgtggaagctttagtgtaccgggctgccc 4516354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 24200784 - 24200623
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||||||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  24200784 ggtaaagttgttgtcatgtgactgaaaagtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 24200686  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |   ||||| |||||||||||||||| ||| ||| || |||||||| | |||| ||||||||    
T  24200685 aatggtgggaacccttcccggaccctgagtatgtgagagctttagtgcaccgggttgcccttt 24200623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 8455486 - 8455316
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| | || |||||| ||| ||||    
T  8455486 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaca-cagggtaaggctgcgtac 8455388  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  |||||||||||||||||||||||||| |  ||| |||||||| | |||| ||||||||    
T  8455387 aatacaccaaatggtgggaccccttcccggaccctgcgtatgccggagctttagtgcaccgggttgcccttt 8455316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 10543663 - 10543835
Alignment:
Q  239 ttggcgcaacgg-taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| | ||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||| | ||||||||||||| |||| |||||| ||| ||||    
T  10543663 ttggcgcaactgataaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacggcctcttgtgtaaaa-aacagggtaaggctgcgtac 10543761  T
Q  338 attacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||| ||||   ||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  10543762 aatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10543835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 12024088 - 12023951
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  12024088 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 12023991  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgta 376  Q
    | ||||||||||  ||||||||| ||||||||||||||||    
T  12023990 aatacaccaaatggtgggaccccctcccggaccctgcgta 12023951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 409
Target Start/End: Original strand, 14530283 - 14530456
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||  ||||    
T  14530283 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctacgtac 14530381  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  14530382 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 14530456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 9671145 - 9671314
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaa-gtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    |||||||||| |||||||||||||||||||||||  ||| ||| |  ||| || ||| |  ||||| |||||||||||||   || |||||| ||| |||    
T  9671145 ttggcgcaaccggtaaagttgttgtcatgtgactggaaatgtcacgggttcaaatcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgta 9671241  T
Q  337 cattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    || ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  9671242 caatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 9671314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 10546193 - 10546298
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 402  Q
    ||||||| ||||| |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||    
T  10546193 ctcttgtataaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttg 10546292  T
Q  403 cccttt 408  Q
    ||||||    
T  10546293 cccttt 10546298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 14444754 - 14444847
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    ||||| |||||||||||||  ||| |||||| ||||||||  ||||||||||  |||||||||||||||||||||||||| | |||| ||||||||    
T  14444754 aacagcctcttgtgtaaaa--acagggtaaggctgtgtacgatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 14444847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 11514401 - 11514554
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| || ||| |  ||||| ||||||||||||| ||||| ||||| ||| ||||    
T  11514401 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaactcctggaaacagcctcttgtgtaaaa-aacaaagtaaggctgcgtac 11514499  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||||  |||||||| ||||| ||||||||||| | |||| ||||||||    
T  11514500 aatacaccaaatggtgggaccc-ttcccagaccctgcgtatgcgggagctttagtg 11514554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 25079888 - 25079749
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||     ||||  ||||||||||||| |||||||||||  || ||||    
T  25079888 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcttagaaacaacctcttgtgtaaaaaaacaaggtaaggatgcgtac 25079789  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    | |||||| |||  ||||||||||||||||||||||||||    
T  25079788 aatacaccgaatggtgggaccccttcccggaccctgcgta 25079749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 239 - 388
Target Start/End: Complemental strand, 21377242 - 21377093
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||| |||||||||||||||||||||||||||| ||| ||  |  ||| |||||     ||||  ||||||||||||| |||| |||||| ||| |||||    
T  21377242 ttggagcaacggtaaagttgttgtcatgtgactgaaaggttacgagttcaagtcatagaaacatcctcttgtgtaaaa-aacagggtaaggctgggtaca 21377144  T
Q  339 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaacttt 388  Q
     | ||||||||  ||||||||||||||| |||||||||| |||||| ||||    
T  21377143 atgcaccaaatggtgggaccccttcccgaaccctgcgtatgtgggagcttt 21377093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 17896290 - 17896379
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    ||||||||||||| || | |||||| ||| ||||| || |||||||  |||||||||||| ||||||||||||| |||||| ||||||||    
T  17896290 ctcttgtgtaaaaaaatagggtaaggctgcgtacaatataccaaatggtgggaccccttctcggaccctgcgtatgtgggagctttagtg 17896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 21779429 - 21779261
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||| ||||||||||||||||||| ||| ||| |  ||| |||||| |   |||| |||||||||||||   || ||||||  || ||||    
T  21779429 ttggcgcaactggtgaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggagacagcctcttgtgtaaaa---cagggtaaggttgcgtac 21779333  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  21779332 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 21779261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 40762344 - 40762234
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| ||||||||||||| |||  |||||| ||  ||||| ||||||||||  |||||||| |||| |||||||||||| |||||| |||||||| | |    
T  40762344 aacagcctcttgtgtaaaa-aactgggtaaggctacgtacaatacaccaaatggtgggaccctttcctggaccctgcgtatgtgggagctttagtgcacc 40762246  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  40762245 gggttgcccttt 40762234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 35017773 - 35017815
Alignment:
Q  229 agagggagttttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  35017773 agagggagccttggcgcaacggtaaagttgttgtcatgtgact 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 5450263 - 5450384
Alignment:
Q  251 taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa-t 349  Q
    ||||||||||||||||||||| ||| ||| |  ||| || ||| |  ||||  ||||||||||||| |||| |||||| ||| ||||| |||||||||      
T  5450263 taaagttgttgtcatgtgactgaaaggtcacgggttcaattcctggaaacaacctcttgtgtaaaaaaacatggtaaggctgcgtacaatacaccaaagg 5450362  T
Q  350 atgggaccccttcccggaccct 371  Q
     ||||||||||||| |||||||    
T  5450363 gtgggaccccttcctggaccct 5450384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 32781392 - 32781324
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctg 372  Q
    ||||||||||||| |||| |||||||||| ||||| ||||||||||  |||||||||||||| |||||||    
T  32781392 ctcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaatggtgggaccccttcccagaccctg 32781324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 34766333 - 34766390
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||||| | ||||||    
T  34766333 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaacgggtttcccttt 34766390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 39914410 - 39914306
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 402  Q
    ||||||||||||| |||| ||||||  |||||||| |||||| |||  ||||||||||| || ||||||||||| | |||| |||||||| | |||| ||    
T  39914410 ctcttgtgtaaaaaaacagggtaaggatgtgtacaatacaccgaatggtgggacccctt-cctgaccctgcgtatgcgggagctttagtgcatcgggttg 39914312  T
Q  403 cccttt 408  Q
    ||||||    
T  39914311 cccttt 39914306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 8575975 - 8576031
Alignment:
Q  353 ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    |||||||||||||||||||||||| |||||| |||||||| | | || |||||||||    
T  8575975 ggaccccttcccggaccctgcgtatgtgggagctttagtgcaccaggttgcccttta 8576031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 27573586 - 27573755
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| |||||||||| |  |||| |||||| ||| ||||    
T  27573586 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcattggttcaagtccgggcaacagcctcttgtgtata--aacatggtaaggctgcgtac 27573683  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||| |||  |||||  |||||| ||| |||||| |||||||| | |||| ||||||||    
T  27573684 aatacaccaaatggtggaaccatttcccaaaccctgtgtatgtgggagctttagtgcatcgggttgcccttt 27573755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 36871518 - 36871626
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| ||||||||| |||  ||| |||||| ||| ||||| ||||||||||  ||||||||||||||||| |||||||| | |||| |||||||| | |    
T  36871518 aacagcctcttgtgtgaaa--acagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga-cctgcgtatgcgggagctttagtgcacc 36871614  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  36871615 gggttgcccttt 36871626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 409
Target Start/End: Original strand, 23397742 - 23397900
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||| ||||||||||||||   | |||||| ||  ||||| |||||||||    
T  23397742 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtgtaaaat---agggtaaggctacgtacaatacaccaaa 23397838  T
Q  349 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    |  |||||||||||| |||||||| | || | |||| || ||||| | |||| |||||||||    
T  23397839 tggtgggaccccttctcggaccctacatatgcgggagctctagtgcaccgggttgcccttta 23397900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 24059053 - 24059010
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 394  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||    
T  24059053 tgggacccctttccggaccctgcgtatgtgggagctttagtgta 24059010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 24890444 - 24890514
Alignment:
Q  307 ttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    |||| ||||| ||||||||||| |||  |||| |||||||| |  ||||||||||||||||||||||||||    
T  24890444 ttgtctaaaaaaacaaggtaaggctgcatacaatacaccaattggtgggaccccttcccggaccctgcgta 24890514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 389
Target Start/End: Complemental strand, 26684781 - 26684639
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacag-tctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa 347  Q
    ||||||||||||||||||||| | ||| |||  | |||||||||| |  |||||  ||||||||||||| || | |||||| ||| ||||| || || ||    
T  26684781 ggtaaagttgttgtcatgtgattgaaaggtcaaaggtttaagtcctgaaaacagacctcttgtgtaaaaaaatatggtaaggctgcgtacaatatactaa 26684682  T
Q  348 at-atgggaccccttcccggaccctgcgtaagtgggaacttta 389  Q
    ||  ||||||| ||||||| |||||||||| | |||| |||||    
T  26684681 atggtgggacctcttcccgaaccctgcgtatgcgggagcttta 26684639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 44643488 - 44643658
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||| |||||||||||  |||||||||| ||| ||| | |||| |||| |    || || |||||  |||||| ||||  ||||| ||| |||||    
T  44643488 ttggcgcaatggtaaagttgtcatcatgtgactgaaaggtcacgtgttcaagttctagaaagagcctcttccgtaaaaaaacagagtaaggctgcgtaca 44643587  T
Q  339 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |  |||||||  |||||||||||||| ||||||||||| | |||| | |||||| | |||||||||||||    
T  44643588 atgtaccaaatggtgggaccccttcccagaccctgcgtatgcgggagccttagtgcaccgggctgcccttt 44643658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 13245181 - 13245096
Alignment:
Q  323 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 407  Q
    |||||| ||| ||||||||||| ||||  ||||||||||||||||||| ||| ||   |||| |||||||||| |||| |||||||    
T  13245181 ggtaaggctgcgtacattacactaaatggtgggaccccttcccggaccatgcatatacgggagctttagtgtatcgggttgccctt 13245096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 35010513 - 35010550
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaa 276  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  35010513 ttggtgcaacggtaaagttgttgtcatgtgactgaaaa 35010550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 40579806 - 40579750
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 407  Q
    |||||||||||||||||||||| ||| | |||| |||||||| | |||| |||||||    
T  40579806 tgggaccccttcccggaccctgagtatgcgggagctttagtgcaccgggttgccctt 40579750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 249 - 408
Target Start/End: Complemental strand, 28817785 - 28817626
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||| ||    
T  28817785 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacacccaa 28817687  T
Q  349 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  28817686 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcatcgggttgcccttt 28817626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 35261644 - 35261814
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| ||| || |  ||||||||||||||||||| |||| ||||||  || ||||    
T  35261644 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagccctggaaacagtctcttgtgtaaaa-aacagggtaaggttgcgtac 35261742  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||| |||||||||||| | |||| |||||||| | |||| ||||||||    
T  35261743 aatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 35261814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 30454265 - 30454097
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   ||||||||||| ||| ||||    
T  30454265 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacaaggtaaggctgcgtac 30454169  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
      ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  30454168 gatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 30454097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 249 - 376
Target Start/End: Original strand, 36720772 - 36720899
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  36720772 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 36720870  T
Q  349 ta-tgggaccccttcccggaccctgcgta 376  Q
    |  ||||||||||||||||||||||||||    
T  36720871 tggtgggaccccttcccggaccctgcgta 36720899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 24365218 - 24365079
Alignment:
Q  250 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 349  Q
    |||||||||||||||||||||||||| ||| |  ||| ||| ||    ||||| ||||||||||||| | || |||||| ||| | ||| ||||||||||    
T  24365218 gtaaagttgttgtcatgtgactaaaatgtcacgggttcaagccctagaaacagcctcttgtgtaaaaaatcagggtaaggctgcgaacaatacaccaaat 24365119  T
Q  350 a-tgggaccccttcccggaccctgcgtaagtgggaacttt 388  Q
      |||||||||||||||||||||||||| |||||| ||||    
T  24365118 ggtgggaccccttcccggaccctgcgtatgtgggagcttt 24365079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 39461166 - 39460994
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||| |||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||| ||||  ||||| ||| ||||    
T  39461166 ttggcgcaactggtaaagttgttgtcatgagactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagagtaaggctgcgtac 39461068  T
Q  338 attacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||  ||||   ||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  39461067 aatacaccaataatggtgagaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 39460994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 12670418 - 12670285
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  12670418 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 12670322  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgc 373  Q
    | ||||||||||  |||||||||||||||||||||||    
T  12670321 aatacaccaaatggtgggaccccttcccggaccctgc 12670285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 12625920 - 12626025
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 402  Q
    ||||||||||||| |||| ||||||||||  |||| ||||||||||  ||||||||| |||||||||||||||| | |||| |||||||| | |||| ||    
T  12625920 ctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggaccccctcccggaccctgcgtatgcgggagctttagtgcaccgggttg 12626019  T
Q  403 cccttt 408  Q
    ||||||    
T  12626020 cccttt 12626025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 373
Target Start/End: Original strand, 2626495 - 2626622
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgt--aaaataacaaggtaagactgtgtacattacacca 346  Q
    ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| |||||||||  |||| |||| |||||||||| ||||| |||||||    
T  2626495 ggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaaaaacagggtaagactgcgtacaatacacca 2626594  T
Q  347 aat-atgggaccccttcccggaccctgc 373  Q
    ||| ||||||||||||||| ||||||||    
T  2626595 aatgatgggaccccttcccagaccctgc 2626622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 409
Target Start/End: Original strand, 13160669 - 13160837
Alignment:
Q  241 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 339  Q
    |||||||| |||||||||||||||||||||||  || ||| |  ||| ||||||    ||||| |||||||||||||  ||| |||||| ||| |||||     
T  13160669 ggcgcaactggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaa--acagggtaaggctgcgtacaa 13160766  T
Q  340 tacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    ||||||||||  |||||||||||||||||||||||||| | |||| ||| ||||   |||| |||||||||    
T  13160767 tacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcgccgggttgcccttta 13160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 44530114 - 44530268
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||| ||||||||||||| || ||| |  ||| |||||  |  ||||  ||||||||||||| |||| |||||| ||| ||||    
T  44530114 ttggcgcaactggtaaagttgctgtcatgtgactagaaggtcacgggttcaagtcttggaaacaacctcttgtgtaaaa-aacagggtaaggctgcgtac 44530212  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||||  ||||||||||||| |||||||||||| | |||| ||||||||    
T  44530213 aatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtg 44530268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 44781675 - 44781520
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||||||||||||| |||||| |||  || |  ||| |||||| |  ||||  ||||||||||||| | || |||||| |||||||||    
T  44781675 ttggcgcaacggtaaagttgttgtcacgtgactgaaagttcacgggttcaagtcctggaaacaacctcttgtgtaaaaga-cagggtaaggctgtgtaca 44781577  T
Q  339 ttacaccaaatatg---ggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
     ||||||||| |||   ||||||| |||| ||||||||||| | |||| ||||||||    
T  44781576 atacaccaaaaatgttgggaccccgtcccagaccctgcgtatgcgggagctttagtg 44781520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 20869666 - 20869535
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||||||||    
T  20869666 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgtgtac 20869570  T
Q  338 attacaccaaatatgggaccccttcccggaccctgc 373  Q
    | |||||| ||  || ||||||||||||||||||||    
T  20869569 aatacacc-aaggtgagaccccttcccggaccctgc 20869535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 5135399 - 5135321
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
    ||||| ||||||||||||| || | |||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  5135399 aacagcctcttgtgtaaaa-aagagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 5135321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 20284232 - 20284101
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaa-ggtaagactgtgtacattacaccaa 347  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| || || |||||| ||| ||||| ||||||||    
T  20284232 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaaaaaagggtaaggctgcgtacaatacaccaa 20284133  T
Q  348 ata---tgggaccccttcccggaccctgcgta 376  Q
      |   ||||||||||||||||||||||||||    
T  20284132 taatggtgggaccccttcccggaccctgcgta 20284101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 29877119 - 29877227
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| || |||||||||| |||| |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| | |||||| | |    
T  29877119 aacagccttttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcgttagtgcacc 29877217  T
Q  397 gggctgccct 406  Q
     |||||||||    
T  29877218 aggctgccct 29877227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 409
Target Start/End: Original strand, 17823541 - 17823712
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| ||||||||||||| | || | |||||||| |||     
T  17823541 ttggcgcaactggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-accaggataagactgcgtaa 17823639  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    | ||||||||||  ||| ||||||||||| ||||||| || |  ||| |||||||| | |||| |||||||||    
T  17823640 aatacaccaaatggtggaaccccttcccgaaccctgcatatgcaggagctttagtgcaccgggttgcccttta 17823712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 18164929 - 18164776
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||| ||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||  |||| ||||||  || ||||    
T  18164929 ttggcgcaaccggtgaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggttgcgtac 18164832  T
Q  338 attacaccaaa-tatgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | |||||||||  ||| ||||  ||||||||||||||||| | |||| ||||||||    
T  18164831 aatacaccaaaggatgtgaccatttcccggaccctgcgtatgcgggagctttagtg 18164776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 407
Target Start/End: Original strand, 45071241 - 45071398
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||| |  || ||| |  ||| |||| | |  ||||| |||||||||||||  ||| |||||| ||| ||||| |||||||||    
T  45071241 ggtaaagttgttgtcatgtgattgtaaggtcacgggttcaagttctggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtacaatacaccaaa 45071338  T
Q  349 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 407  Q
    |  ||||||||||||||||||| |||||| | |||| ||| |||| | |||| |||||||    
T  45071339 tggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgccctt 45071398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 6760787 - 6760959
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||| |||||| || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||  ||||    
T  6760787 ttggcgcaactggtaaagttgttgtcatatgactagaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggcttcgtac 6760885  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||  |   |||||||||||| ||||||| || || | |||| |||||||| | |||| ||||||||    
T  6760886 aatacaccaataatggtgggaccccttctcggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 6760959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 21070861 - 21070729
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaa--ggtaagactgtgtacattacacca 346  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| || ||  |||||| ||| ||||| |||||||    
T  21070861 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaaaaaaagggtaaggctgcgtacaatacacca 21070762  T
Q  347 aata---tgggaccccttcccggaccctgcgta 376  Q
    |  |   ||||||||||||||||||||||||||    
T  21070761 ataatggtgggaccccttcccggaccctgcgta 21070729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 19729367 - 19729440
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 373  Q
    ||||||||||| |||||||   || |||||| ||||||||| ||||||||||  |||||||||||||||||||||||    
T  19729367 aacagtctcttatgtaaaa---cagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgc 19729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 26954108 - 26954206
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa 347  Q
    ||||||||||||||||||||| || || ||| |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||    
T  26954108 ggtaaagttgttgtcatgtgattagaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaaacagggtaaggctgcgtacaatacaccaa 26954206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 20869948 - 20870060
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 394  Q
    ||||||||||||||||||| |||| |||||| ||| ||||| ||||||||  |   ||||||||||||| |||||| || || | |||| |||||||| |    
T  20869948 aacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaataatggtgggaccccttccaggaccccgcatatgcgggagctttagtgca 20870046  T
Q  395 acgggctgcccttt 408  Q
     |||| ||||||||    
T  20870047 ccgggttgcccttt 20870060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 29521855 - 29521701
Alignment:
Q  239 ttggcgcaacgg-taaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| | ||||||||||||| |||||||  || ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||    
T  29521855 ttggcgcaactgataaagttgttgtcgtgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtttaaaa-aacagggtaaggctgcgtac 29521757  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||||  ||||| ||| |||| ||||||||||| | |||| ||||||||    
T  29521756 aatacaccaaatggtgggaacccatcccagaccctgcgtatgcgggagctttagtg 29521701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 407
Target Start/End: Complemental strand, 42083868 - 42083699
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||||||||| ||||||||| |||||| ||| ||| |  ||| |||||| |  ||||| || |||||||||| ||   || ||| ||| |||||    
T  42083868 ttggcgcaacggtaaaattgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaa-aatggggcaaggctgcgtaca 42083770  T
Q  339 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 407  Q
     || ||||||    ||||||||||||||| |||||| ||| |||||| |||||||| |  |||||||||||    
T  42083769 gtataccaaaatggtgggaccccttcccgaaccctgtgtacgtgggagctttagtgcattgggctgccctt 42083699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 5689662 - 5689750
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    ||||||||||||| | || |||||| ||| ||||| ||||||||||  ||| ||||||||||| ||| |||||| |||||| ||||||||    
T  5689662 ctcttgtgtaaaa-agcagggtaaggctgcgtacaatacaccaaatggtggaaccccttcccgaaccatgcgtatgtgggagctttagtg 5689750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 10857859 - 10857964
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctg 402  Q
    ||||||||||||| |||| |||||| ||| | ||| |||||||| |  ||||||| ||||| ||||| |||||| | |||| |||||||| | |||| ||    
T  10857859 ctcttgtgtaaaaaaacagggtaaggctgcgcacaatacaccaattggtgggaccacttcctggaccttgcgtatgcgggagctttagtgcaccgggttg 10857958  T
Q  403 cccttt 408  Q
    ||||||    
T  10857959 cccttt 10857964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 249 - 408
Target Start/End: Original strand, 25250498 - 25250659
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||  || ||| |||||| |||||| |  ||||| || |||||||||| || | |||| | ||| ||||| ||||||||     
T  25250498 ggtaaagttgttgtcatgtgactggaaggtcacatgttcaagtcctggaaacagcctattgtgtaaaa-aatagggtatggctgcgtacaatacaccaat 25250596  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |   ||||||||||||||| |||| || || | ||||  ||||||| | |||| ||||||||    
T  25250597 aatggtgggaccccttcccgaaccccgcatatgcgggagatttagtgcaccgggttgcccttt 25250659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 40444845 - 40444901
Alignment:
Q  352 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||| |||||||||||||| || ||| |||||||| | || ||||||||||    
T  40444845 gggaccccttgccggaccctgcgtatgttggagctttagtgcaccgagctgcccttt 40444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 38879546 - 38879718
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||    
T  38879546 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctgcgtac 38879644  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  38879645 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 38879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 43334167 - 43334339
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||| ||||||||| |||| |||||| ||| ||||    
T  43334167 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaaaaacagggtaaggctgcgtac 43334266  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||| |   |||||||||||||||||||||||| | | |||| |||||||| | |||| ||||||||    
T  43334267 aatacaccaaaaatggtgggaccccttcccggaccctgcg-atgcgggagctttagtgcaccgggttgcccttt 43334339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 249 - 389
Target Start/End: Original strand, 27328728 - 27328870
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||||||||||||||||| |||| |||||| ||| ||||| ||||||||     
T  27328728 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaat 27328826  T
Q  349 ta---tgggaccccttcccggaccctgcgtaagtgggaacttta 389  Q
     |   ||||||||||||||| |||||||||| | |||| |||||    
T  27328827 aatggtgggaccccttcccgaaccctgcgtatgcgggagcttta 27328870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 3771307 - 3771474
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    |||||||||| |||| |||||| ||| |||||| ||| ||| || |||||||||  |  ||||||||   |||||||| |||| |||||| ||||| |||    
T  3771307 ttggcgcaacagtaatgttgttctcacgtgactgaaaggtcacaggtttaagtcatgtaaacagtct---gtgtaaaaaaacagggtaaggctgtgaaca 3771403  T
Q  339 ttacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
     |||||||| |  |||||||||||||||||| ||| ||| |||||| |||||||| | |||||||||||||    
T  3771404 atacaccaattggtgggaccccttcccggactctgtgtatgtgggagctttagtgcaccgggctgcccttt 3771474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 24448855 - 24449025
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| || |||||||||| || | |||||| ||| ||||    
T  24448855 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaa-aatagggtaaggctgcgtac 24448953  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  |||||||||||||||||||||||||| |  ||| |||||||| | |||| ||||||||    
T  24448954 aatacaccaaatggtgggaccccttcccggaccctgcgtatgcaggagctttagtgcaccgggttgcccttt 24449025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 29334420 - 29334531
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacacca-aata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaa 395  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||| ||||||| |||  |||||||| ||||||||||||||||| |||||| ||||| || |     
T  29334420 aacagcctcttgtgtaaaa-aacaaggtaaggctgcgtacaatacaccagaatggtgggacccattcccggaccctgcgtatgtgggatctttaatgcac 29334518  T
Q  396 cgggctgcccttt 408  Q
    |||||||||||||    
T  29334519 cgggctgcccttt 29334531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 41014284 - 41014453
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| |||||||||||||||||||||||  || ||| |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  41014284 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 41014381  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||| |||||| || || | |||| |||||||| | |||| ||||||||    
T  41014382 aatacaccaaatggtgggaccccttcctggaccccgcatatgcgggagctttagtgcaccgggttgcccttt 41014453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 19143111 - 19142975
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||| |||||| ||||||||| |||||||||| | | || ||| |||||| |  ||||  |||||||||||||  ||| |||||| ||| |||||    
T  19143111 ttggcgcaatggtaaaattgttgtcacgtgactaaaatgccacaggttcaagtcctggaaacaacctcttgtgtaaaa--acagggtaaggctgcgtaca 19143014  T
Q  339 ttacaccaaata-tgggaccccttcccggaccctgcgta 376  Q
     ||||||||||  ||||||||||||||||||| ||||||    
T  19143013 gtacaccaaatggtgggaccccttcccggaccatgcgta 19142975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 409
Target Start/End: Original strand, 1565396 - 1565567
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||  ||| |||||| |  ||||  |||||| |||||| ||||   |||| ||| ||||    
T  1565396 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgagtaaaaaaacatattaaggctgcgtac 1565495  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    | | ||||||||   |||||||||||||||||||||| || |||||| | |||||| | |||| |||||||||    
T  1565496 aatgcaccaaatggcgggaccccttcccggaccctgcatatgtgggagc-ttagtgcaccgggttgcccttta 1565567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 239 - 373
Target Start/End: Complemental strand, 8170152 - 8170019
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||  ||| ||| |  ||| |||||| |  ||||| || ||||||||||   || |||||| ||| ||||    
T  8170152 ttggcgcaactggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaa---cagggtaaggctgcgtac 8170056  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgc 373  Q
    | ||||||||||  |||||||||||||||||||||||    
T  8170055 aatacaccaaatggtgggaccccttcccggaccctgc 8170019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 209096 - 209019
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaa 316  Q
    |||||||| |||||||||||||||||||||||||||| ||| || ||| |||||| |  ||||  |||||||||||||    
T  209096 ttggcgcagcggtaaagttgttgtcatgtgactaaaaggtcacaagttcaagtcctggcaacaacctcttgtgtaaaa 209019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 16957373 - 16957449
Alignment:
Q  333 tgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  16957373 tgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 16957449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 238 - 348
Target Start/End: Original strand, 22187249 - 22187359
Alignment:
Q  238 tttggcgcaacg-gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 336  Q
    |||||||||||  |||||||||||||||| ||||| ||| ||| |  |||||||||| |  ||||| ||||||||||||| |||| | |||||||| |||    
T  22187249 tttggcgcaactagtaaagttgttgtcatttgactgaaaggtcaccggtttaagtcctggaaacagcctcttgtgtaaaa-aacatgataagactgcgta 22187347  T
Q  337 cattacaccaaa 348  Q
    || |||||||||    
T  22187348 caatacaccaaa 22187359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 408
Target Start/End: Original strand, 32703411 - 32703557
Alignment:
Q  260 tgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccc 358  Q
    |||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  ||||||||    
T  32703411 tgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccc 32703507  T
Q  359 cttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  32703508 cttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 32703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 39301089 - 39301234
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||||||||||||||||||||||| ||| ||| ||| |  ||| |||||  | |||||  |||||||||| || |||| ||||||  || ||| |    
T  39301089 ttggcgcaacggtaaagttgttgtcatgttactgaaaggtcacgggttcaagtcttgggaacaacctcttgtgtataa-aacagggtaaggatgcgtata 39301187  T
Q  339 ttacaccaaata--tgggaccccttcccggaccctgcgtaagtggga 383  Q
     | ||||||| |  ||||||||||||||||||||| |||| ||||||    
T  39301188 atgcaccaaaaaggtgggaccccttcccggaccctccgtatgtggga 39301234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 35710278 - 35710446
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||| ||| ||| ||| |  ||| |||||| |  ||||| ||||||||||||||   | |||||| ||| || |    
T  35710278 ttggcgcaactggtaaagttgttgtcatgtaactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaat---agggtaaggctgcgttc 35710374  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||| | ||| || | |||| || ||||| | |||| ||||||||    
T  35710375 aatacaccaaatggtgggaccccttcccggaacatgcatatgcgggagctctagtgcaccgggttgcccttt 35710446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 43574631 - 43574723
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttag 390  Q
    |||| ||||||||||| || |||| |||||| ||| ||||| || |||||||  |||||||||||||||||||||||||| | |||| ||||||    
T  43574631 aacaatctcttgtgtagaa-aacagggtaaggctgcgtacaatataccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttag 43574723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 16880757 - 16880646
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||  || |||| ||||||||||| |||||| | |||| |||||||| | |    
T  16880757 aacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtgtgaccacttcccggaccatgcgtatgcgggagctttagtgcacc 16880659  T
Q  397 gggctgcccttta 409  Q
    ||| | |||||||    
T  16880658 gggtttcccttta 16880646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 23974746 - 23974778
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    |||||||||||||||||||||||||||||||||    
T  23974746 ttggcgcaacggtaaagttgttgtcatgtgact 23974778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 31694284 - 31694245
Alignment:
Q  232 gggagttttggcgcaacggtaaagttgttgtcatgtgact 271  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  31694284 gggagttttggcgcaacagtaaagttgttgtcacgtgact 31694245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 270
Target Start/End: Complemental strand, 39079935 - 39079904
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgac 270  Q
    ||||||||||||||||||||||||||||||||    
T  39079935 ttggcgcaacggtaaagttgttgtcatgtgac 39079904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 7368423 - 7368528
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||   || |||||| ||| ||||| |||||||| |  ||||||||||||||||||||||| || |||||| || ||||| | |    
T  7368423 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaattggtgggaccccttcccggaccctgcatatgtgggagctctagtgcacc 7368519  T
Q  397 gggctgccc 405  Q
    ||| |||||    
T  7368520 gggttgccc 7368528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 19093894 - 19093948
Alignment:
Q  354 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    ||||||| ||||||||||||||| || ||| |||||||| | |||||||||||||    
T  19093894 gacccctacccggaccctgcgtatgttggagctttagtgcaccgggctgcccttt 19093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 30877621 - 30877563
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    ||||||||||||||||||||||| || |||||| || ||||| | |||| |||||||||    
T  30877621 tgggaccccttcccggaccctgcatatgtgggagctctagtgcaccgggttgcccttta 30877563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 7097869 - 7097759
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||  ||| ||||||  || ||||| ||||||||||  || |||||||||||| |||||||||| | |||| |||||||| | |    
T  7097869 aacagcctcttgtgtaaaa--acagggtaaggttgcgtacaatacaccaaatggtgagaccccttcccgaaccctgcgtatgcgggagctttagtgcacc 7097772  T
Q  397 gggctgcccttta 409  Q
      |||||||||||    
T  7097771 atgctgcccttta 7097759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 20135629 - 20135703
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata---tgggaccccttcccggaccc 370  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||| ||||||||  |   ||||||||||||||||||||    
T  20135629 aacagcctcttgtgtaaaa-aacaaggtaaggctgcgtacaatacaccaataatggtgggaccccttcccggaccc 20135703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 25622538 - 25622579
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  25622538 tgggaccccttcccggaccctgcgtatgcgggagctttagtg 25622579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 1354925 - 1354757
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  1354925 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcactggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 1354829  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1354828 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1354757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 1346929 - 1347097
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| | |||||||||||   || |||||| ||| ||||    
T  1346929 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagccacttgtgtaaaa---cagggtaaggctgcgtac 1347025  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1347026 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1347097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 12222087 - 12221914
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||  |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  12222087 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcttggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 12221989  T
Q  338 attacaccaaata---tgggaccccttcccggaccctgcgtaagtgggaac-tttagtgtaacgggctgcccttt 408  Q
    | ||||||||  |   |||||||||||||||||||||||||| | |||| | ||||||| | |||| ||||||||    
T  12221988 aatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagcttttagtgcaccgggttgcccttt 12221914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 408
Target Start/End: Complemental strand, 29356009 - 29355855
Alignment:
Q  256 ttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata---tg 352  Q
    |||||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||||||| | |||| |||||| ||| ||||| ||||||||  |   ||    
T  29356009 ttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaga-aacagggtaaggctgcgtacaatacaccaataatggtg 29355911  T
Q  353 ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  29355910 ggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 29355855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 3815247 - 3815109
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| || |||||||||| || | |||| ||||| ||||    
T  3815247 ttggcgcaactggtaaagttgttgtcatgtgactgaaatgtcacgggttcaagtcctggaaacagactattgtgtaaaa-aatatggtacgactgcgtac 3815149  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgta 376  Q
    | ||||||||||  |||||||| |||||| ||||| ||||    
T  3815148 aatacaccaaatggtgggaccctttcccgaaccctacgta 3815109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 376
Target Start/End: Original strand, 9161098 - 9161227
Alignment:
Q  248 cggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa 347  Q
    |||||||||||||||||||||||| ||| ||| || ||| |||||| |  ||||| ||||||||||||  ||||  ||||| ||| ||||| |||| |||    
T  9161098 cggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaa--aacagagtaaggctgcgtacaatacatcaa 9161195  T
Q  348 ata---tgggaccccttcccggaccctgcgta 376  Q
      |   |||||||||||| |||||||||||||    
T  9161196 taatggtgggaccccttctcggaccctgcgta 9161227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 392
Target Start/End: Complemental strand, 32728314 - 32728173
Alignment:
Q  250 gtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 349  Q
    |||||||||||||||||||||| ||| ||| ||  || ||||   |  ||||  ||||| ||||||| |||| |||||||||||||||| || |||||||    
T  32728314 gtaaagttgttgtcatgtgactgaaaggtcacagattcaagttttggaaacaacctcttatgtaaaa-aacagggtaagactgtgtacaatataccaaat 32728216  T
Q  350 atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    |  || ||| ||||| |||||| |||| | |||||||||||||    
T  32728215 agtggtccctttcccagaccctacgtatgcgggaactttagtg 32728173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 12885991 - 12886048
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||||||| ||||||||||| |||||| |||||||| | |||| ||||||||    
T  12885991 tgggaccccttcccagaccctgcgtatgtgggagctttagtgcaccgggttgcccttt 12886048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 13905148 - 13905012
Alignment:
Q  239 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 338  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |  | | |||||| |  |||   ||||||||||||| |||| |||||| |||  ||||    
T  13905148 ttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacgggctcaagtcctgaaaacgacctcttgtgtaaaa-aacagggtaaggctgcataca 13905050  T
Q  339 ttacaccaaatatgggaccccttcccggaccctgcgta 376  Q
     | ||||||||   |||||| |||||| ||||||||||    
T  13905049 attcaccaaatggtggaccctttcccgaaccctgcgta 13905012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 26097185 - 26097293
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||   || |||||| ||| ||||| |||||||||| | |||||||||||||||||||||| || | |||| || ||||| | |    
T  26097185 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatgaagggaccccttcccggaccctgcatatgcgggagctctagtgcacc 26097281  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  26097282 gggttgcccttt 26097293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 10734962 - 10734904
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
    |||| ||||||||||||||||||||| | |||| |||||||  | ||||||||||||||    
T  10734962 tgggcccccttcccggaccctgcgtatgcgggagctttagtccaccgggctgcccttta 10734904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 6808473 - 6808530
Alignment:
Q  351 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |||||||||||||||||||||| ||| | |||| |||||||| | |||| ||||||||    
T  6808473 tgggaccccttcccggaccctgtgtatgcgggagctttagtgcaccgggttgcccttt 6808530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 20400643 - 20400743
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||| |||||||||||||||||| ||| ||| || ||| ||||   |  |||| |||||||||||||| |||| |||||||||| ||||| ||||| |||    
T  20400643 ggtatagttgttgtcatgtgactgaaaggtcacaggttcaagttatggaaacaatctcttgtgtaaaa-aacagggtaagactgcgtacagtacactaaa 20400741  T
Q  349 ta 350  Q
    ||    
T  20400742 ta 20400743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 25557750 - 25557858
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||   || |||||| ||| ||||| |||||||||| | || ||||||||||||||||||| || | |||| || ||||| | |    
T  25557750 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatgaaggaaccccttcccggaccctgcatatgcgggagctctagtgcacc 25557846  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  25557847 gggttgcccttt 25557858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 6024258 - 6024332
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa--at-atgggaccccttcccggaccc 370  Q
    ||||| ||||||||||||| |||| |||||||||| ||||| ||||||||  || |||||||| ||||||||||||    
T  6024258 aacagcctcttgtgtaaaa-aacatggtaagactgcgtacaatacaccaataatgatgggacctcttcccggaccc 6024332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 13193 - 13024
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||| ||||||  |||||||||| ||| ||||    
T  13193 ttggcgcaaccggtaaagttgttgtcatgtgactgaaaggtcaccggttcaagtcctggaaacagcctcttgcgtaaaa--acaaggtaaggctgcgtac 13096  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | |||||| |||  |||||||||||||| ||||||||||| | |||  |||||||| | |||| ||||||||    
T  13095 aatacaccgaatggtgggaccccttcccagaccctgcgtatgcgggggctttagtgcaccgggttgcccttt 13024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 373
Target Start/End: Complemental strand, 10207 - 10085
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   ||||  ||||||||| ||||| |||||||||    
T  10207 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagagtaagactgcgtacaatacaccaaa 10111  T
Q  349 ta-tgggaccccttcccggaccctgc 373  Q
    || |||||||||||||||||||||||    
T  10110 tagtgggaccccttcccggaccctgc 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 373
Target Start/End: Complemental strand, 20535 - 20413
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   ||||  ||||||||| ||||| |||||||||    
T  20535 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagagtaagactgcgtacaatacaccaaa 20439  T
Q  349 ta-tgggaccccttcccggaccctgc 373  Q
    || |||||||||||||||||||||||    
T  20438 tagtgggaccccttcccggaccctgc 20413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 408
Target Start/End: Original strand, 30544 - 30712
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| ||| |  ||| |||||| |  ||||| |||||||||||   |||| |||| | ||| ||||    
T  30544 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcaccggttcaagtcctggaaacagcctcttgtgtaa---aacagggtagggctgcgtac 30640  T
Q  338 attacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    | ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  30641 aatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 30712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 408
Target Start/End: Original strand, 46807 - 46966
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||||||||||||||||||||| || ||| |  ||| |||| | |  ||||  ||||||||||||| || | ||||||  || ||||| |||||||||    
T  46807 ggtaaagttgttgtcatgtgactagaaggtcacgggttcaagtgctggaaacaacctcttgtgtaaaa-aatagggtaaggttgcgtacaatacaccaaa 46905  T
Q  349 ta-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 408  Q
    |  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  46906 tggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 46966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 24937 - 24788
Alignment:
Q  239 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 337  Q
    |||||||||| ||||||||||||||||||||||| ||| |||    ||| |||||     ||||| ||||||||||||| |||| |||||| ||| ||||    
T  24937 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtc-----aacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 24844  T
Q  338 attacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    |  |||||||||  ||||||||||||||| |||||||||| | |||| ||||||||    
T  24843 aacacaccaaatggtgggaccccttcccgaaccctgcgtatgcgggagctttagtg 24788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 409
Target Start/End: Original strand, 58953 - 59115
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    |||||| || ||||||||||||| ||| ||| |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||||||| ||||| |||||||||    
T  58953 ggtaaacttattgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaagactgcgtacaatacaccaaa 59051  T
Q  349 tatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 409  Q
     ||||   ||||||||||| ||| ||||||| | |||| |||||||| | |||| |||||||||    
T  59052 aatggtgggaccccttcccagactctgcgtatgcgggagctttagtgcatcgggttgcccttta 59115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 392
Target Start/End: Complemental strand, 1744 - 1603
Alignment:
Q  249 ggtaaagttgttgtcatgtgactaaaaagtcgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 348  Q
    ||||||||||||||||||||||| ||| |||    ||| |||||| |  ||||  |||||||||||||   || | |||| |||  |||| |||||||||    
T  1744 ggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctgaaaacaacctcttgtgtaaaa---caggataaggctgcatacaatacaccaaa 1648  T
Q  349 t-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    | ||||||||||||||||||||| ||||| | |||| ||||||||    
T  1647 tgatgggaccccttcccggacccggcgtatgcgggagctttagtg 1603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 10841 - 10929
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    ||||||||||||| |||| |||| | ||| || || ||||||||||  |||||||||||||||||||||||||| | |||| ||||||||    
T  10841 ctcttgtgtaaaa-aacagggtagggctgcgtccaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 10929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 48742 - 48634
Alignment:
Q  298 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaac 396  Q
    ||||| |||||||||||||   || |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |    
T  48742 aacagcctcttgtgtaaaa---cagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcacc 48646  T
Q  397 gggctgcccttt 408  Q
    ||| ||||||||    
T  48645 gggttgcccttt 48634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 3575 - 3647
Alignment:
Q  304 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgta 376  Q
    |||||||||||||||  |||||||| ||| ||| | |||||| ||| |||||||||||||||| ||||||||||    
T  3575 ctcttgtgtaaaatat-aaggtaaggctgcgtataatacaccgaatgatgggaccccttcccgaaccctgcgta 3647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 72974 - 72883
Alignment:
Q  301 agtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 392  Q
    |||||||||||||||| |||| |||||| |||  |||| ||||||||||  | | ||||||||||||| |||||||| | |||| ||||||||    
T  72974 agtctcttgtgtaaaa-aacacggtaaggctgcctacaatacaccaaatggtagtaccccttcccggaacctgcgtatgcgggagctttagtg 72883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University