View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_high_5 (Length: 458)
Name: NF18207_high_5
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Complemental strand, 46186224 - 46185792
Alignment:
| Q |
10 |
aagaatatgaatccaagcaaattttaactactcgatcaaaacttgaggagcatgcttcatttgtttataaaagaaacattttctgcaaatttcaagaaga |
109 |
Q |
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| T |
46186224 |
aagaatatgaatccaagcgcattttaactactggatcaaaacttgaagagcatgcttcatttgtttataaaagaaaaattttctgcaaatttcaagaaga |
46186125 |
T |
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| Q |
110 |
gcttgcacagatcaacaatttcactaaaattagaagattcaaagagaaggaccgagatatgagtatgaagtgtctaatggctacaaccctaaagatacct |
209 |
Q |
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| T |
46186124 |
gcttgcacggatcaacaatttcactaaaattagaagattcaaagagaaggaccgagatatgagtatgaagtgtctaatggctacaacccaaaagatacct |
46186025 |
T |
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| Q |
210 |
tcattgtacatgtagatttaggccaggagttgctaaatgtggctgccactatatgaattcatgggatttttcaatcaaaaggtattgtgcaaatccctga |
309 |
Q |
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| T |
46186024 |
tcattgtccatgtagatttaggccaaaagttgctaaatgtggctgccactatatgaattcatgggatttttcaatcaaaaggtattgtgcaaatccctga |
46185925 |
T |
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| Q |
310 |
tcatttcattctgcaacattggaccaaggatgctacgtaccaaaagattttaagaagggtgcatgcacaacaaaaagcaagttcattagttgatcttgct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46185924 |
tcatttcattctgcaacattggaccaaggatgctacgtaccaaaagattttaagaagggtgcatgcacaacaaaaagcaagttcattagttgatcttgct |
46185825 |
T |
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| Q |
410 |
gaagaatcagggaatttatacaagttcattatt |
442 |
Q |
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| T |
46185824 |
gaagaatcagagaatttatacaagttcattatt |
46185792 |
T |
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