View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18207_high_9 (Length: 358)

Name: NF18207_high_9
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18207_high_9
NF18207_high_9
[»] chr6 (5 HSPs)
chr6 (167-293)||(25049070-25049198)
chr6 (119-166)||(1234419-1234466)
chr6 (119-166)||(26976683-26976730)
chr6 (288-345)||(30725750-30725807)
chr6 (45-85)||(27874432-27874473)
[»] chr4 (4 HSPs)
chr4 (119-166)||(24520577-24520624)
chr4 (45-85)||(42265737-42265778)
chr4 (45-85)||(42270456-42270497)
chr4 (301-348)||(11108217-11108265)
[»] chr3 (5 HSPs)
chr3 (119-166)||(5819065-5819112)
chr3 (119-166)||(5823827-5823874)
chr3 (33-85)||(54545698-54545750)
chr3 (286-345)||(9294338-9294398)
chr3 (300-345)||(41558010-41558056)
[»] scaffold1880 (1 HSPs)
scaffold1880 (119-166)||(40-87)
[»] chr8 (2 HSPs)
chr8 (45-85)||(9439814-9439855)
chr8 (45-85)||(9444534-9444575)
[»] chr7 (1 HSPs)
chr7 (300-348)||(37657214-37657263)
[»] chr5 (2 HSPs)
chr5 (301-348)||(27937376-27937424)
chr5 (126-166)||(29585787-29585826)
[»] chr1 (2 HSPs)
chr1 (301-344)||(19323273-19323317)
chr1 (300-349)||(40439564-40439615)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 25049070 - 25049198
Alignment:
Q  167 aaaagttattcccctttcaatttcaatcaagtacaaaagacaattgctacatacaagaagtttaaagtgatt--aaaagatgcaacgggattcctgcacc 264  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  25049070 aaaagttcttcccctttcaatttcaatcaagtacaaaagacaattgctacatacaagaagtttaaagtgattaaaaaagatgcaacgggtttcctgcacc 25049169  T
Q  265 atggctagctagctatacttgaaatattt 293  Q
    || ||||||||||||||||||||||||||    
T  25049170 atagctagctagctatacttgaaatattt 25049198  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 1234466 - 1234419
Alignment:
Q  119 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1234466 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 1234419  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 26976683 - 26976730
Alignment:
Q  119 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26976683 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 26976730  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 30725750 - 30725807
Alignment:
Q  288 atatttttatgtcttaaatatgtatttcattctcgcaatttggatcgtttaaaaattg 345  Q
    ||||||||||| ||||||||||||||||||||| |||||| || ||||||||||||||    
T  30725750 atatttttatggcttaaatatgtatttcattcttgcaattagggtcgtttaaaaattg 30725807  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 27874432 - 27874473
Alignment:
Q  45 tgttgacaatagtgcaccg-aaaattagtttcaaagacaaag 85  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  27874432 tgttgacaatagtgcaccgaaaaattactttcaaagacaaag 27874473  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 24520577 - 24520624
Alignment:
Q  119 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24520577 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 24520624  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 42265778 - 42265737
Alignment:
Q  45 tgttgacaatagtgcaccg-aaaattagtttcaaagacaaag 85  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  42265778 tgttgacaatagtgcaccgaaaaattactttcaaagacaaag 42265737  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 42270497 - 42270456
Alignment:
Q  45 tgttgacaatagtgcaccg-aaaattagtttcaaagacaaag 85  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  42270497 tgttgacaatagtgcaccgaaaaattactttcaaagacaaag 42270456  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 11108265 - 11108217
Alignment:
Q  301 ttaaatatgtatttcattctcgcaatttgg-atcgtttaaaaattgatc 348  Q
    ||||||||||||||||| || |||||| || ||||||||||||||||||    
T  11108265 ttaaatatgtatttcatccttgcaattagggatcgtttaaaaattgatc 11108217  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 5819065 - 5819112
Alignment:
Q  119 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5819065 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 5819112  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 5823827 - 5823874
Alignment:
Q  119 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5823827 atgtggtaattccacaaaagtgtgctttaccactttcatgtgttcaca 5823874  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 54545750 - 54545698
Alignment:
Q  33 ccaaccaatttgtgttgacaatagtgcaccg-aaaattagtttcaaagacaaag 85  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  54545750 ccaaccaattt-tgttgacaatagtgcaccgaaaaattactttcaaagacaaag 54545698  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 9294398 - 9294338
Alignment:
Q  286 aaatatttttatgtcttaaatatgtatttcattctcgcaatt-tggatcgtttaaaaattg 345  Q
    ||||||||||||| |||||||||||||||||| || ||||||  || ||||||||||||||    
T  9294398 aaatatttttatggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattg 9294338  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 41558010 - 41558056
Alignment:
Q  300 cttaaatatgtatttcattctcgcaatt-tggatcgtttaaaaattg 345  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||    
T  41558010 cttaaatatgtatttcattcttgcaattatgggtcgtttaaaaattg 41558056  T

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Target: scaffold1880 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1880
Description:

Target: scaffold1880; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 40 - 87
Alignment:
Q  119 atgtggtaattccacaaaagtgtgctttaccactttcctgtgttcaca 166  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  40 atgtggtaattccgcaaaagtgtgctttactactttcatgtgttcaca 87  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 9439814 - 9439855
Alignment:
Q  45 tgttgacaatagtgcaccg-aaaattagtttcaaagacaaag 85  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  9439814 tgttgacaatagtgcaccgaaaaattactttcaaagacaaag 9439855  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 9444534 - 9444575
Alignment:
Q  45 tgttgacaatagtgcaccg-aaaattagtttcaaagacaaag 85  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  9444534 tgttgacaatagtgcaccgaaaaattactttcaaagacaaag 9444575  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 37657263 - 37657214
Alignment:
Q  300 cttaaatatgtatttcattctcgcaatttgg-atcgtttaaaaattgatc 348  Q
    |||||||||||||||||| || |||||| || ||||||||||||||||||    
T  37657263 cttaaatatgtatttcatccttgcaattagggatcgtttaaaaattgatc 37657214  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 27937424 - 27937376
Alignment:
Q  301 ttaaatatgtatttcattctcgcaatt-tggatcgtttaaaaattgatc 348  Q
    ||||||||||||||||| || |||||| ||| |||||||||||||||||    
T  27937424 ttaaatatgtatttcatccttgcaattatgggtcgtttaaaaattgatc 27937376  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 29585787 - 29585826
Alignment:
Q  126 aattccacaaaagtgtgctttaccactttcctgtgttcaca 166  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  29585787 aattcaacaaaagtg-gctttaccactttcctgtgttcaca 29585826  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 19323317 - 19323273
Alignment:
Q  301 ttaaatatgtatttcattctcgcaatt-tggatcgtttaaaaatt 344  Q
    |||||||||||||||||||| | |||| |||||||||||||||||    
T  19323317 ttaaatatgtatttcattcttgtaattatggatcgtttaaaaatt 19323273  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 40439615 - 40439564
Alignment:
Q  300 cttaaatatgtatttcattctcgcaatt--tggatcgtttaaaaattgatca 349  Q
    |||||||||||||||||| || ||||||  ||| ||||||||||||||||||    
T  40439615 cttaaatatgtatttcatccttgcaattaatgggtcgtttaaaaattgatca 40439564  T

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