View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_low_1 (Length: 679)
Name: NF18207_low_1
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 94 - 663
Target Start/End: Original strand, 54912852 - 54913414
Alignment:
| Q |
94 |
taattattaattaacagacaaaaactgttgtattaataaaagcatgcaaaattgtatataagg-attaagaaaagaaacctcatgatattgacacgaaga |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54912852 |
taattattaattaacagacaaaaactgttgtattaataaaagcatgcaaaattgtatataagggattaagaaaagaaacctcatgatattgacacgaaga |
54912951 |
T |
|
| Q |
193 |
tgagctctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagtacaatacagtaaaccttgcaaaagggtgtttccaca |
292 |
Q |
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| T |
54912952 |
tgagctctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagtacaatatagtaaaccttgcaaaagggtgtttccaca |
54913051 |
T |
|
| Q |
293 |
acgtagcaacgatcttattgcctccttttgtgtctacaatatgaacgtcgacgcttttatccgtcgtgccggaaatcttcaacaccccatcatcgttctc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54913052 |
acgtagcaacgatcttattgcctccttttgtgtctacaatatgaacgtcgacgcttttatccgtcgtgccggaaatcttcaacaccccatcatcgttctc |
54913151 |
T |
|
| Q |
393 |
tttgtaaacttcgtatgttggtggctccggcgggaaaaacgcaaactttgccgccaccgttcccgttacattacccatttacagaacagaagggatgaaa |
492 |
Q |
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| T |
54913152 |
tttgtaaacttcgtatgttggtggctccggcgggaaaaacgcaaactttgccgccaccgttcccgtgacattacccatttacagaacagaagggatgaaa |
54913251 |
T |
|
| Q |
493 |
c-aaaacaattttgtggtggtttatttcatgataaactacgaaaacattatatagaacaaaaaagaaagagttattttgggtaatgttcgaatatttctg |
591 |
Q |
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| T |
54913252 |
caaaaacaattttgtggtggtt----------taaactacgaaaacattatatagaacaaaaaagaaagagttattttgggtaatgttcgaagatttctg |
54913341 |
T |
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| Q |
592 |
ggtataattatgtgtgtgc-aaaagttgatgagattgttatcttttatttctataatgtatatgattttgaag |
663 |
Q |
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| T |
54913342 |
ggtataattatgtgtgtgcaaaaagttgatgagattgttatcttttatttctataatgtatatgattttgaag |
54913414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 11464684 - 11464742
Alignment:
| Q |
199 |
ctaagctcaatgaagaggtcacgcatctgacccaaatcagcagcattaccatgagagta |
257 |
Q |
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| T |
11464684 |
ctaagctcaatgaaaagctcatacatctgacccagatcagcagcgttgccatgagagta |
11464742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 7338061 - 7338093
Alignment:
| Q |
222 |
catctgacccaaatcagcagcattaccatgaga |
254 |
Q |
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| T |
7338061 |
catctgacccaaatcagcagcatttccatgaga |
7338093 |
T |
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