View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18207_low_19 (Length: 210)

Name: NF18207_low_19
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18207_low_19
NF18207_low_19
[»] chr4 (5 HSPs)
chr4 (14-110)||(27078469-27078565)
chr4 (14-110)||(27166534-27166630)
chr4 (49-88)||(27076275-27076314)
chr4 (155-204)||(27078568-27078619)
chr4 (155-204)||(27166633-27166684)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 27078469 - 27078565
Alignment:
Q  14 atcaaaacgcacatttaattctgtcatannnnnnnattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 110  Q
    ||||||| || |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078469 atcaaaaagcgcatttaattctgtcatatttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 27078565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 27166534 - 27166630
Alignment:
Q  14 atcaaaacgcacatttaattctgtcatannnnnnnattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 110  Q
    ||||||| || |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27166534 atcaaaaagcgcatttaattctgtcatatttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 27166630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 27076314 - 27076275
Alignment:
Q  49 attcaatcattgaaatatacataacataggtctagatcaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27076314 attcaatcattgaaatatacataacataggtctagatcaa 27076275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 27078568 - 27078619
Alignment:
Q  155 caagaatctgaaatataatctag--gtcattcatatcttcttctcactcgac 204  Q
    ||||||||||||||||| |||||  |||||||||||||||||| || |||||    
T  27078568 caagaatctgaaatatattctagtagtcattcatatcttcttcacaatcgac 27078619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 27166633 - 27166684
Alignment:
Q  155 caagaatctgaaatataatctag--gtcattcatatcttcttctcactcgac 204  Q
    ||||||||||||||||| |||||  |||||||||||||||||| || |||||    
T  27166633 caagaatctgaaatatattctagtagtcattcatatcttcttcacaatcgac 27166684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University