View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18207_low_3 (Length: 579)
Name: NF18207_low_3
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 564
Target Start/End: Complemental strand, 2237930 - 2237387
Alignment:
| Q |
9 |
gaagaaaatacttatgatgaatatatatttttt-ggagtatcataaaacattgaaagaatttctctaacgtcaccaaacaagtatgaggactcccttnnn |
107 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||| ||||||| |||||||| ||||| |
|
|
| T |
2237930 |
gaagaaaataattatgatgaatatttatttttttggagtatcataaaacattgaaaga-tttatctaacctcaccaatcaagtatggggacta------- |
2237839 |
T |
|
| Q |
108 |
nnnnttcaagttttggattatcactcattcctttttactttttgacccttttatatcgacgtataattgtgctaaactctcaaaatataggagttactac |
207 |
Q |
| |
|
|||||||| || ||||| ||||||||| || ||||| ||||| |||||||| | |||||||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
2237838 |
-----tcaagtttggggctatcattcattccttctttcttttcgacccgtttatatcaaagtataattatgctaaactttcaatatataggagttactat |
2237744 |
T |
|
| Q |
208 |
gttggaacatcttcacttgaagaaggtgcgaccattaaagattgttgcatattccgtggaagccttgtaaaacttgatgctcaaaccggcgatatcttat |
307 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2237743 |
gttggaacatcttcactagaagaaggtgcaaccattaaagattgttgcatatttcgtggaagtcttgtaaaacttgatgctcaaaccggcgacatcttat |
2237644 |
T |
|
| Q |
308 |
ggaaaacccatatgttaccggataacaacggaaagataggagcatatgctggagctgccatttggggaagtagtccttccattgatgtttatcgaaaaca |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2237643 |
ggaaaacctatatgttaccggataacaacggaaagataggagcatatgctggagctgccatttggggaagtagtccttccattgatgtttatcgaaaaca |
2237544 |
T |
|
| Q |
408 |
tgtctatattgccaccggaaatctctactctgctccaaaaaacgtacttgaatgtcaagaaagacaaaataatcaaactactcctattgaacaagacaag |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2237543 |
tgtctatattgccaccggaaatctctactctgccccaaaaaacgtacttgaatgtcaagaaagacaaaataatcaaactactcctattgaacaagacaag |
2237444 |
T |
|
| Q |
508 |
tgtgttgaaccagaaaatcattccaattcaatcttggcccttgatttggacagtggt |
564 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
2237443 |
tgtgttgaaccagaaaatcactcaaattcaatcttggcccttgatttggacagtggt |
2237387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 566
Target Start/End: Original strand, 2261068 - 2261126
Alignment:
| Q |
508 |
tgtgttgaaccagaaaatcattccaattcaatcttggcccttgatttggacagtggtga |
566 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||||||||| ||| |||||| |
|
|
| T |
2261068 |
tgtgttgaaccagaaaatcattctaattcaatcttagcacttgatttgtacaatggtga |
2261126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University