View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_low_4 (Length: 516)
Name: NF18207_low_4
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 34423686 - 34424170
Alignment:
| Q |
19 |
ggtcaatctcccattttcaacctgatccatatgtcaaaggatagaggaaaaaatgacaggttgtgtttttaaaaacggtgatgctataaacacgaatatt |
118 |
Q |
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| T |
34423686 |
ggtcactctctcattttcaacctgatccatatgtcaaaggatagaggaaaaaatgacaggtcgtgtttttaaaaacggtgatgctataaacacgaatatt |
34423785 |
T |
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| Q |
119 |
atcaccacaaacacatcgtgaagcatcgaggagcgttagatctatttagatccgggaggcaagggtagagtacaaatgataaaggggtatgcgtagctgc |
218 |
Q |
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| T |
34423786 |
atcaccacaaacacatcgtgaggcatcgaggagcgttagatctatttagatccgggaggcaagggtagagtacaaatgataaaggggtttgcgtagctgc |
34423885 |
T |
|
| Q |
219 |
aaatcaactttgatgatgtttttgtggaaatcattttcgctttaagtagcaatttcctttaaaaaatagtgatattaatatgtttaatattgttgattca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423886 |
aaatcaactttgatgatgtttttgtggaaatcattttcgctataagtagaattttcctttaaaaaatagtgatattaatatgtttaatattgttgattca |
34423985 |
T |
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| Q |
319 |
tttcaaaataggagattgtttttcgttgataaaaaataagacgattatttgaatataggtgaattgattaaaaataggaggattatatgaaagtaggaga |
418 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423986 |
tttaaaaataggaga-tgtttttcgttgataaaaaataagacgattatttgattatcggtgaattgattaaaaataggaggattatatgaaagtaggaga |
34424084 |
T |
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| Q |
419 |
atagtttgcattgtaagtatacnnnnnnnnttctccaaaaaa--gtatataagaatatgtcaaggaaaattaatatattttctgtg |
502 |
Q |
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|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34424085 |
atagtttgcattgtaagtatacaaaaaaattcctccaaaaaactatatataagaatatgtcaaggaaaattaatatattttctgtg |
34424170 |
T |
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