View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_low_6 (Length: 400)
Name: NF18207_low_6
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 5 - 381
Target Start/End: Original strand, 3498288 - 3498664
Alignment:
| Q |
5 |
ttggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaaaaatttgaaactgttgagcagtgaag |
104 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498288 |
ttggatcaaaggctacccctgctacaccacaacactgggtagagggtgcagcttcagaactcacatatgctgaaaaatttgaaactgttgagcagtgaag |
3498387 |
T |
|
| Q |
105 |
tggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498388 |
tggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtc |
3498487 |
T |
|
| Q |
205 |
ttgggagaaaattccagaccatttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacatac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3498488 |
ttgggagaaaattccagaccatttccctgtccaggcaaaaccacccatactataacggtagctggactaaaagctagcacaccggccacgtgtaacatac |
3498587 |
T |
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| Q |
305 |
cactgtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaac |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498588 |
cactgtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaac |
3498664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 144 - 381
Target Start/End: Original strand, 3510582 - 3510822
Alignment:
| Q |
144 |
taaaggggcaaaaccaatccagttgggtgggctaagaggtg---ctgaagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggc |
240 |
Q |
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|||||| ||||||||| |||||||||||| ||||||||||| | | | | |||||| ||||||||||||||| |||| |||||| | |||||| |
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| T |
3510582 |
taaaggtgcaaaaccactccagttgggtgcgctaagaggtggcacgccattattgatacttttcttgggagaaaattggagactatttccacgaccaggc |
3510681 |
T |
|
| Q |
241 |
aaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcc |
340 |
Q |
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| |||| ||||||| |||| || ||||||||||| |||| ||||||||||||| | || |||| |||||||||||||||||||| | | |||||| | |
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| T |
3510682 |
ataacctcccatacaataatggcagctggattaacagctggcacaccggccacaagcaaggtaccgttgtctgtgatgatagcatcaccggttataattc |
3510781 |
T |
|
| Q |
341 |
cacttggcccacattctattagccctttactagtgcaaaac |
381 |
Q |
| |
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|||||||||| ||| | | |||||||||||||||||||||| |
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| T |
3510782 |
cacttggcccgcatgccaatagccctttactagtgcaaaac |
3510822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 3510530 - 3510583
Alignment:
| Q |
58 |
tcagtactcacatatgctgaaaaatttgaaactgttgagcagtgaagtggtata |
111 |
Q |
| |
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|||| |||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
3510530 |
tcaggactcacatatgctgaaaattttgaaactggcgagcagtgaagtggtata |
3510583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 127 - 381
Target Start/End: Complemental strand, 31951725 - 31951471
Alignment:
| Q |
127 |
ctgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
226 |
Q |
| |
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|||||||||| ||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951725 |
ctgaacaaaatggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
31951626 |
T |
|
| Q |
227 |
ttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatc |
326 |
Q |
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|||| |||||||| || || | ||||| ||||| |||||||||||||||||| ||||||||||||| || || ||||| ||||||||||||||||||| |
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| T |
31951625 |
ttccatgtccaggagaagcctcacatacaataacagtagctggattaaaagctcgcacaccggccacatgcaatgtaccattgtctgtgatgatagcatc |
31951526 |
T |
|
| Q |
327 |
agcagctataatcccacttggcccacattctattagccctttactagtgcaaaac |
381 |
Q |
| |
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|||||||||| |||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
31951525 |
tccagctataattccacttggcccacaatctaatagccctttactaatgcaaaac |
31951471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 126 - 381
Target Start/End: Original strand, 31950874 - 31951129
Alignment:
| Q |
126 |
actgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagacca |
225 |
Q |
| |
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||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
31950874 |
actgaacaaaaaggcagctaaaggagcaaaaccactccagttgggtgggctaagaggtgttgaagttgtaatacttgtcttgggagcaaattccagacca |
31950973 |
T |
|
| Q |
226 |
tttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcat |
325 |
Q |
| |
|
|||| |||||| | ||||| ||||||| |||||||||||||||||||||||| || || | ||||| | ||| |||| ||| |||||||||||||| |
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| T |
31950974 |
gttccatgtccatgagaaacctcccatacaataacggtagctggattaaaagcttgcgcagcagccacatacaacgtaccgttgtgtgtgatgatagcat |
31951073 |
T |
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| Q |
326 |
cagcagctataatcccacttggcccacattctattagccctttactagtgcaaaac |
381 |
Q |
| |
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| ||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
31951074 |
ctccagatataatcccacttggcccacaatctaatagccctttactagtgcaaaac |
31951129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 31951791 - 31951721
Alignment:
| Q |
8 |
gatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
78 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||| |
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| T |
31951791 |
gatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaa |
31951721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 31950808 - 31950879
Alignment:
| Q |
7 |
ggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
78 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||||| | ||||||||||| |||||||||| ||||| |
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|
| T |
31950808 |
ggatcaaaggctacccctactacaccacaacacttggtagtgagtgcagcttcaaaactcacatatactgaa |
31950879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 2354640 - 2354709
Alignment:
| Q |
312 |
tgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaac |
381 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
2354640 |
tgtgatgatagcatctccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaac |
2354709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 2354629 - 2354557
Alignment:
| Q |
309 |
gtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaac |
381 |
Q |
| |
|
|||||||||||||| | || |||||||||| ||||||||| |||| |||| |||||||||||||||||||||| |
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|
| T |
2354629 |
gtctgtgatgatagaaccaccagctataataccacttggctcacaatctaatagccctttactagtgcaaaac |
2354557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 35567823 - 35567868
Alignment:
| Q |
55 |
gcttcagtactcacatatgctgaaaaatttgaaactgttgagcagt |
100 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
35567823 |
gcttcaggactcacatatgccgaaaaatttgaaactggtgagcagt |
35567868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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